genome.fa.s151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2874
Parameters: 2 7 7 80 10 50 1000
Length:  61823

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6495--6554	29	2.1	29	100	0	120	35	26	13	25	1.93
7503--7562	29	2.1	29	100	0	120	23	21	23	31	1.98
18978--19140	46	3.5	46	76	9	165	25	30	16	27	1.97
18926--19194	94	2.9	94	75	13	268	25	28	17	28	1.98
22030--22201	67	2.6	66	81	7	170	31	16	29	22	1.96
22054--22236	67	2.8	64	78	8	201	28	16	31	23	1.96
23324--23371	23	2.1	23	100	0	96	39	12	8	39	1.73
27253--27371	39	3.0	39	92	2	184	43	21	5	30	1.73
27301--27367	22	3.3	22	66	33	67	47	20	2	28	1.65
29548--29593	16	2.7	18	83	6	60	2	23	0	73	0.94
29542--29594	22	2.4	22	84	6	63	1	22	0	75	0.90
32651--32703	24	2.2	25	86	3	72	60	0	26	13	1.33
34753--34832	39	2.1	39	100	0	160	43	12	17	26	1.84
34993--35073	31	2.5	33	84	9	98	34	2	14	48	1.58
34991--35075	32	2.5	34	78	16	88	35	2	14	48	1.56
35201--35248	20	2.5	19	86	6	62	25	6	16	52	1.67
35611--35688	36	2.2	35	81	2	84	29	7	19	43	1.78
36324--36431	51	2.1	51	84	0	135	31	12	14	41	1.83
36345--36423	17	4.6	17	73	6	70	29	11	15	44	1.81
36476--36521	18	2.6	18	75	0	56	36	8	10	43	1.71
37889--38096	97	2.1	99	91	3	339	32	13	14	38	1.86
38374--38582	90	2.3	90	78	8	221	22	21	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38573--38647	30	2.5	30	78	4	80	17	17	18	46	1.84
38527--38907	119	3.2	117	73	7	381	19	18	18	43	1.89
38706--38794	30	3.0	30	86	0	124	16	20	23	39	1.92
38573--38907	60	5.6	60	67	14	154	19	18	18	43	1.89
39056--39408	79	4.6	79	76	5	285	26	15	17	40	1.89
39019--39775	75	10.0	77	71	10	420	26	14	17	41	1.87
41521--41804	3	94.3	3	65	21	98	58	3	5	31	1.39
41828--41860	16	2.1	16	88	5	50	66	0	0	33	0.92
43214--43461	123	2.0	123	95	3	446	35	11	23	29	1.90
43620--43675	26	2.2	26	100	0	112	30	7	26	35	1.83
46827--46855	14	2.0	15	93	6	51	48	6	31	13	1.69
47149--50331	72	42.1	71	73	14	1697	33	19	16	30	1.94
46858--50251	387	8.9	374	86	8	2875	33	19	16	30	1.94
46847--50331	457	7.7	446	79	12	2130	33	19	16	30	1.94

Tables:   1

The End!