Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1338
Parameters: 2 7 7 80 10 50 1000
Length:  58377

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--29
1
29.0
1
100
0
58
0
100
0
0
0.00
7187--7213
11
2.5
11
100
0
54
22
18
14
44
1.86
7266--7336
19
4.1
17
78
20
67
2
18
4
74
1.10
7263--7337
16
4.5
16
74
22
66
2
20
4
73
1.12
17013--17109
30
3.2
30
75
2
106
27
26
16
28
1.97
18819--18856
11
3.2
12
85
14
53
73
7
5
13
1.22
18838--18872
16
2.2
16
90
10
54
82
5
5
5
0.93
19784--19854
37
1.9
37
86
11
101
76
2
18
2
1.04
19794--19843
6
8.2
6
83
14
50
76
2
20
2
0.99
19904--19934
12
2.6
12
100
0
62
45
12
16
25
1.83
22079--22175
30
3.2
30
75
2
106
27
26
16
28
1.97
27663--27703
11
3.7
11
93
0
64
12
2
2
82
0.86
31004--31054
14
3.5
14
78
5
57
78
3
1
15
0.99
31095--31120
13
2.0
13
100
0
52
84
0
15
0
0.62
31136--31174
20
1.9
20
84
5
51
82
2
7
7
0.94
31092--31175
34
2.5
34
84
11
118
73
3
11
10
1.21
32061--32106
20
2.2
20
84
3
56
65
0
26
8
1.21
32113--32148
12
3.0
12
87
0
54
33
0
25
41
1.55
36828--36863
17
2.1
18
89
5
56
72
0
13
13
1.13
36949--37033
39
2.2
38
91
6
136
58
8
23
9
1.56
47362--47458
30
3.2
30
75
2
106
28
15
26
28
1.96
49635--49665
12
2.6
12
100
0
62
25
16
12
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49726--49775
6
8.2
6
81
16
50
2
20
2
76
0.99
49715--49785
37
1.9
37
86
11
101
2
18
2
76
1.04
49711--49771
16
3.8
16
77
14
63
3
19
1
75
1.03
50673--50729
30
1.9
30
85
0
78
8
5
1
84
0.84
50709--50735
12
2.2
12
100
0
54
14
7
0
77
0.97
50691--50717
1
27.0
1
100
0
54
0
0
0
100
0.00
52410--52506
30
3.2
30
75
2
106
28
15
26
28
1.96

Tables:   1

The End!