genome.fa.s1599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold981
Parameters: 2 7 7 80 10 50 1000
Length:  29913

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932--1206	79	3.5	79	79	8	292	44	17	19	18	1.87
932--1234	53	5.8	53	76	9	271	44	17	19	19	1.87
932--1234	26	11.5	27	79	10	256	44	17	19	19	1.87
2117--2397	27	10.5	27	77	9	247	43	18	19	19	1.88
2117--2396	81	3.5	80	83	5	309	43	18	19	18	1.88
3282--3562	27	10.4	27	77	6	241	43	18	19	18	1.88
3282--3562	81	3.5	80	83	5	309	43	18	19	18	1.88
4450--4730	27	10.4	27	77	6	241	43	18	19	18	1.88
4450--4730	81	3.5	80	83	5	309	43	18	19	18	1.88
5617--5897	27	10.4	27	77	6	241	43	18	19	18	1.88
5617--5897	81	3.5	80	83	5	309	43	18	19	18	1.88
6785--7065	27	10.4	27	77	6	241	43	18	19	18	1.88
6785--7065	81	3.5	80	83	5	309	43	18	19	18	1.88
7952--8232	27	10.4	27	77	6	241	43	18	19	18	1.88
7952--8232	81	3.5	80	83	5	309	43	18	19	18	1.88
9119--9399	27	10.4	27	77	6	241	43	18	19	18	1.88
9119--9399	81	3.5	80	83	5	309	43	18	19	18	1.88
10286--10566	27	10.4	27	77	6	241	43	18	19	18	1.88
10286--10566	81	3.5	80	83	5	309	43	18	19	18	1.88
11453--11733	27	10.4	27	77	6	241	43	18	19	18	1.88
11453--11733	81	3.5	80	83	5	309	43	18	19	18	1.88
12620--12900	27	10.4	27	77	6	241	43	18	19	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12620--12900	81	3.5	80	83	5	309	43	18	19	18	1.88
13787--14067	27	10.4	27	77	6	241	43	18	19	18	1.88
13787--14067	81	3.5	80	83	5	309	43	18	19	18	1.88
14953--15233	27	10.4	27	77	6	241	43	18	19	18	1.88
14953--15233	81	3.5	80	83	5	309	43	18	19	18	1.88
16121--16403	85	3.5	80	79	10	269	43	18	19	19	1.89
16121--16405	53	5.3	53	73	11	229	42	18	19	19	1.89
16121--16405	27	10.5	27	74	13	212	42	18	19	19	1.89
17290--17570	27	10.4	27	76	6	248	43	18	18	18	1.88
17290--17569	81	3.5	81	84	3	325	43	18	18	18	1.88
18457--18737	27	10.4	27	77	6	241	43	18	19	18	1.88
18457--18737	81	3.5	80	83	5	309	43	18	19	18	1.88
19624--19904	27	10.4	27	77	6	241	43	18	19	18	1.88
19624--19904	81	3.5	80	83	5	309	43	18	19	18	1.88
20790--21070	27	10.4	27	77	6	241	43	18	19	18	1.88
20790--21070	81	3.5	80	83	5	309	43	18	19	18	1.88
21956--22236	27	10.4	27	77	6	241	43	18	19	18	1.88
21956--22236	81	3.5	80	83	5	309	43	18	19	18	1.88
23124--23402	80	3.5	80	82	5	325	43	18	19	18	1.88
23124--23401	107	2.6	107	78	7	316	43	17	19	19	1.88
23124--23404	27	10.5	27	77	10	258	43	18	19	19	1.89
23124--23404	53	5.3	53	77	8	275	43	18	19	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24288--24568	27	10.4	27	77	6	241	43	18	19	18	1.88
24288--24568	81	3.5	80	83	5	309	43	18	19	18	1.88
25455--25756	27	11.4	27	77	9	232	44	18	18	18	1.87
25455--25756	54	5.7	54	73	11	266	44	18	18	18	1.87
25455--25727	80	3.5	79	79	10	276	44	17	19	18	1.87
26643--26725	26	3.3	26	80	15	86	46	14	22	15	1.82
26820--26984	25	6.4	25	79	12	138	45	16	17	20	1.86
26820--26984	27	6.3	27	79	12	136	45	16	17	20	1.86
26820--26984	26	6.3	26	80	10	135	45	16	17	20	1.86
27863--28194	27	12.5	27	78	10	271	43	17	19	19	1.88
29076--29394	27	12.5	27	75	10	189	42	17	19	20	1.89
29097--29209	24	4.7	24	77	13	83	45	15	20	18	1.86
29273--29327	26	2.2	24	87	6	74	41	18	14	25	1.88
29081--29394	51	6.2	52	69	16	158	43	17	18	20	1.88

Tables:   1

The End!