genome.fa.s1720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2211
Parameters: 2 7 7 80 10 50 1000
Length:  46679

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20--508	42	11.7	40	72	16	254	17	34	30	16	1.93
100--324	124	1.8	124	83	5	303	18	34	30	16	1.93
48--508	85	5.5	85	80	4	472	17	33	31	17	1.93
133--508	169	2.2	168	83	4	483	18	34	30	16	1.93
514--588	23	3.2	23	86	3	96	18	37	37	6	1.77
799--1090	42	6.9	42	82	8	335	19	34	28	17	1.95
8991--9083	42	2.2	43	90	3	143	19	39	27	12	1.88
9071--9119	25	2.0	25	91	0	80	18	46	22	12	1.82
9096--10136	43	24.6	41	76	8	750	18	33	31	16	1.93
9118--9196	34	2.3	34	93	2	131	18	37	35	7	1.80
9204--10123	85	10.8	84	81	5	693	17	33	32	16	1.93
9125--10136	128	8.0	128	77	6	879	18	33	32	16	1.93
9330--10065	298	2.5	298	91	2	1149	18	32	32	16	1.93
9096--10130	256	4.1	255	82	6	1038	18	33	31	16	1.93
10141--10219	24	3.3	24	85	5	106	20	35	37	6	1.78
10428--10719	42	6.9	42	82	8	335	19	34	28	17	1.95
18621--18713	42	2.2	43	90	3	143	19	39	27	12	1.88
18701--18749	25	2.0	25	91	0	80	18	46	22	12	1.82
18726--19763	43	24.6	41	76	7	782	17	33	32	16	1.93
18748--18826	34	2.3	34	93	2	131	18	37	35	7	1.80
18834--19750	85	10.8	84	82	5	716	17	33	32	17	1.93
18755--19763	128	8.0	128	77	6	911	17	33	32	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18960--19692	298	2.5	298	92	2	1181	17	33	32	16	1.93
19768--19846	24	3.3	24	85	5	106	20	35	37	6	1.78
20055--20346	42	6.9	42	82	8	335	19	34	28	17	1.95
25755--25921	42	4.0	42	86	7	214	17	34	29	17	1.94
33798--34552	42	17.8	41	85	3	785	20	36	28	15	1.92
33798--34550	85	8.9	85	86	2	987	20	36	28	15	1.92
33802--34550	254	2.9	253	88	1	1043	20	36	28	15	1.92
34649--34722	24	3.1	24	94	3	132	14	35	41	8	1.76
40047--40184	42	3.3	42	82	9	172	17	31	31	19	1.95
41548--41730	40	4.7	40	83	6	223	24	27	22	24	2.00
41548--41730	79	2.3	80	83	8	232	24	27	22	24	2.00

Tables:   1

The End!