genome.fa.s180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2899
Parameters: 2 7 7 80 10 50 1000
Length:  200339

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5391--5444	28	1.9	28	96	0	99	42	11	1	44	1.50
9538--9586	25	1.9	26	95	4	91	36	12	2	48	1.52
11581--11629	25	2.0	25	95	0	89	38	12	2	46	1.53
13650--13701	25	2.1	25	85	0	68	50	13	1	34	1.53
20287--20335	25	1.9	26	91	4	82	38	14	2	44	1.56
25208--25255	25	2.0	25	88	8	73	54	0	6	39	1.26
25315--25358	12	3.6	12	84	3	52	61	0	6	31	1.22
25341--25376	18	2.1	18	94	5	65	58	0	2	38	1.13
25435--25496	23	2.6	24	82	5	63	66	0	6	27	1.16
27520--27573	24	2.2	24	93	0	90	38	12	3	44	1.61
29623--29674	26	2.0	26	96	0	95	40	11	5	42	1.65
31714--31760	24	1.9	24	82	4	58	46	12	2	38	1.54
31721--31774	24	2.2	24	93	0	90	38	12	3	44	1.61
35925--35974	26	1.9	26	100	0	100	40	14	0	46	1.44
36090--36225	68	2.0	68	97	0	254	30	19	18	31	1.96
38269--38321	26	2.0	26	82	7	63	26	15	20	37	1.92
39764--39819	26	2.2	26	100	0	112	35	26	7	30	1.83
40967--41016	26	1.9	26	91	0	82	38	12	4	46	1.60
45932--45961	5	5.8	5	96	4	51	16	0	0	83	0.65
47868--47917	26	1.9	26	91	0	82	38	12	2	48	1.52
49986--50037	26	2.0	26	92	0	86	40	13	5	40	1.68
62583--62764	28	6.5	28	91	1	276	28	12	26	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73973--74012	21	2.0	20	85	5	53	70	7	2	20	1.24
74144--74198	19	2.9	18	76	10	65	52	5	1	40	1.35
74351--74383	17	1.9	17	93	0	57	66	3	0	30	1.06
74368--74439	23	3.3	22	77	15	69	65	4	2	27	1.25
74387--74506	49	2.4	51	76	16	128	60	2	1	35	1.20
74434--74547	15	7.4	15	66	15	63	58	0	1	38	1.14
74466--74503	19	2.0	19	94	0	67	65	0	0	34	0.93
74472--74533	29	2.1	28	88	8	88	62	0	0	37	0.95
79228--79277	26	1.9	26	95	0	91	38	14	2	46	1.56
83452--83505	25	2.2	25	93	0	90	51	12	3	31	1.57
83461--83538	25	3.0	26	88	1	113	43	12	2	41	1.56
85577--85626	26	1.9	26	95	0	91	38	14	2	46	1.56
86512--86567	26	2.2	26	93	0	94	28	7	26	37	1.83
89715--89745	12	2.6	12	94	0	53	12	25	48	12	1.77
94605--94660	26	2.2	26	96	0	103	28	8	26	35	1.87
99008--99057	26	1.9	26	95	0	91	46	2	14	38	1.56
101123--101174	26	2.0	26	92	0	86	44	5	9	40	1.61
103243--103294	26	2.0	26	96	0	95	42	5	11	40	1.65
105357--105407	26	2.0	26	88	7	77	45	1	13	39	1.55
106102--106233	66	2.1	61	91	7	210	34	18	12	34	1.89
107644--107690	22	2.2	21	84	3	58	36	21	8	34	1.84
107661--107702	19	2.1	21	91	8	70	35	16	9	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108565--108795	84	2.7	84	87	4	322	22	23	22	31	1.98
108579--108716	41	3.3	40	66	18	102	21	23	23	31	1.99
109859--110121	125	2.1	125	92	0	427	24	22	22	30	1.99
109984--110258	84	3.3	84	95	0	496	25	21	23	29	1.99
109821--110205	209	1.9	204	91	3	628	25	22	22	29	1.99
111910--112349	225	2.0	225	94	0	772	30	20	21	27	1.98
117110--117160	19	2.7	19	96	0	93	39	15	11	33	1.84
118367--118416	26	1.9	26	95	0	91	46	2	14	38	1.56
123141--123190	19	2.6	19	84	6	57	38	2	6	54	1.37
123161--123249	45	2.0	43	82	12	108	34	2	4	58	1.31
123224--123289	22	3.0	21	81	12	64	30	1	1	66	1.10
123232--123274	13	3.2	13	80	6	50	27	2	2	67	1.15
123224--123289	14	4.6	14	78	12	55	30	1	1	66	1.10
123420--123474	19	2.9	18	74	10	56	40	3	5	50	1.43
130523--130697	40	4.6	40	82	11	208	26	27	21	24	1.99
130630--130695	33	2.0	33	100	0	132	24	30	24	21	1.99
137587--138275	96	7.2	96	93	3	1147	33	8	28	29	1.86
137587--138275	47	14.3	49	92	3	1127	33	8	28	29	1.86
138394--138501	37	2.9	37	90	0	171	25	20	29	25	1.99
139762--140150	157	2.4	159	90	3	613	23	20	29	26	1.99
139762--140150	197	2.0	199	89	3	606	23	20	29	26	1.99
139762--140150	40	9.8	40	91	3	608	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143668--144210	47	11.3	47	92	3	879	33	7	29	30	1.85
143669--144210	96	5.6	96	94	2	921	33	7	28	30	1.85
144329--144436	37	2.9	37	90	0	162	25	20	28	25	1.99
148758--148859	40	2.6	40	89	7	147	24	27	23	24	2.00
156687--156947	45	5.8	45	71	15	173	30	17	26	25	1.97
156681--157021	90	3.8	90	88	1	481	31	17	25	26	1.97
158467--158536	9	7.7	9	73	7	61	37	1	0	61	1.05
158475--158524	20	2.5	22	75	18	54	38	2	0	60	1.09
158510--158548	18	2.2	18	95	0	69	35	0	0	64	0.94
158485--158549	27	2.3	28	84	10	80	38	0	0	61	0.96
158651--158697	19	2.3	21	85	7	62	31	4	0	63	1.13
158827--158881	19	2.9	18	76	10	65	40	1	5	52	1.35
159154--159304	67	2.3	64	82	11	171	33	5	9	52	1.56
165068--165117	26	1.9	26	95	0	91	38	12	2	48	1.52
167167--167217	26	2.0	26	92	0	84	41	11	3	43	1.60
169286--169336	26	2.0	26	96	0	93	41	11	1	45	1.52
171404--171454	26	2.0	26	96	0	93	41	11	1	45	1.52
173520--173570	26	2.0	26	96	0	93	41	11	1	45	1.52
175640--175690	26	2.0	26	96	0	93	41	11	1	45	1.52
177757--177807	26	2.0	26	96	0	93	41	11	1	45	1.52
179870--179920	26	2.0	26	96	0	93	41	11	1	45	1.52
181987--182037	26	2.0	26	96	0	93	41	11	1	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184104--184154	26	2.0	26	96	0	93	41	11	1	45	1.52
190415--190465	26	2.0	26	96	0	93	41	11	1	45	1.52
197069--197122	24	2.2	24	90	0	81	46	3	12	37	1.60
199133--199181	25	1.9	26	91	4	82	40	2	12	44	1.53

Tables:   1

The End!