genome.fa.s181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2864
Parameters: 2 7 7 80 10 50 1000
Length:  146604

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4121--4282	27	6.1	27	87	2	211	44	18	12	24	1.84
4126--4282	79	2.0	79	88	0	233	44	17	12	24	1.84
14172--14468	6	48.8	6	76	17	276	48	13	17	20	1.81
14172--14468	85	3.5	85	92	1	472	48	13	17	20	1.81
16492--16760	40	6.8	40	86	3	350	24	20	28	26	1.99
16508--16780	120	2.3	120	94	0	467	24	19	28	27	1.99
18221--18294	27	2.8	27	82	10	82	37	20	24	17	1.93
18245--18302	27	2.1	27	84	6	73	37	25	20	15	1.92
18459--18517	22	2.7	22	81	0	64	32	22	25	20	1.98
18605--18687	27	3.1	26	84	5	103	37	20	21	20	1.95
18886--19081	27	7.3	27	85	0	221	26	19	18	35	1.95
19086--19548	27	17.1	27	83	4	549	41	9	20	27	1.84
26214--26241	14	2.0	14	100	0	56	28	0	21	50	1.49
27360--27482	43	2.9	42	70	11	115	25	17	25	31	1.97
39435--39487	26	2.0	26	100	0	106	47	7	18	26	1.75
39437--39497	26	2.3	26	91	0	95	44	8	14	32	1.75
41926--41974	17	2.9	17	77	14	57	4	16	0	79	0.88
41927--41974	22	2.2	22	84	0	60	4	16	0	79	0.89
42395--42457	30	2.1	30	87	0	90	33	14	26	25	1.94
45701--45813	28	4.0	29	87	2	158	30	30	14	24	1.94
45703--45813	57	1.9	57	87	3	161	29	31	14	24	1.94
46029--46075	8	6.0	8	77	2	51	8	23	21	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46034--46080	16	2.9	16	87	0	67	10	21	23	44	1.83
46855--46884	13	2.2	14	94	5	53	73	0	0	26	0.84
54513--54621	27	4.0	27	84	5	123	20	21	20	38	1.94
54511--54621	53	2.1	54	84	5	145	19	20	20	38	1.93
54907--54973	27	2.6	25	77	15	64	19	23	19	37	1.94
54925--54981	27	2.1	27	87	6	80	15	22	24	36	1.94
55170--55200	12	2.6	12	94	0	53	16	12	12	58	1.64
55116--55180	31	2.1	31	88	0	94	23	18	10	47	1.79
59360--59509	67	2.2	67	81	8	171	32	17	28	21	1.96
59384--59567	67	2.8	64	77	8	194	29	17	29	22	1.97
71305--71394	46	2.0	46	93	0	153	41	13	15	30	1.85
71470--71507	19	2.0	19	100	0	76	42	5	10	42	1.62
81694--81915	79	2.8	78	81	10	261	25	21	27	26	1.99
81696--81915	40	5.5	39	79	11	214	25	21	27	25	1.99
89868--90089	79	2.8	79	81	9	263	25	21	27	26	1.99
89868--90075	40	5.2	40	84	7	262	24	21	27	25	1.99
91401--91671	49	5.5	49	92	7	419	32	7	28	32	1.85
91401--91674	96	2.8	97	91	7	432	31	7	28	32	1.84
91401--91730	96	3.3	95	86	9	364	31	8	29	30	1.86
91849--91966	38	3.1	37	86	3	155	25	18	30	25	1.98
94830--95152	47	6.8	49	94	2	527	32	8	30	29	1.86
95271--95383	35	3.1	37	84	6	142	25	19	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101911--102019	39	2.8	39	90	1	166	44	11	9	35	1.72
109281--109306	13	2.0	13	100	0	52	30	15	23	30	1.95
118238--118287	25	2.0	25	100	0	100	24	20	12	44	1.85
119814--119958	41	3.4	43	76	9	127	25	17	26	29	1.98
133716--133893	27	6.6	27	83	3	205	26	15	28	29	1.96
133717--133872	82	1.9	81	88	3	233	26	15	28	29	1.96
133713--133893	82	2.2	81	83	2	229	27	15	27	29	1.96
141531--141708	27	6.6	27	83	3	205	26	15	28	29	1.96
141532--141687	82	1.9	81	88	3	233	26	15	28	29	1.96
141528--141708	82	2.2	81	83	2	229	27	15	27	29	1.96
145617--146323	47	15.4	47	88	7	1005	32	8	29	29	1.87
145617--146323	93	7.7	92	87	8	953	32	8	29	29	1.87
146442--146519	37	2.1	37	86	6	106	25	17	30	25	1.97

Tables:   1

The End!