genome.fa.s234.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2297
Parameters: 2 7 7 80 10 50 1000
Length:  156935

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4433--4496	18	3.6	18	80	0	74	31	15	12	40	1.85
4615--4649	13	2.7	13	95	0	61	51	11	20	17	1.75
5706--5740	17	2.1	17	94	0	61	0	25	0	74	0.82
5703--5737	13	2.8	13	91	4	54	0	25	0	74	0.82
6049--6086	20	1.9	20	89	10	60	52	5	0	42	1.24
6245--6285	21	2.0	21	85	9	57	39	7	7	46	1.60
8524--8772	50	4.8	50	85	4	284	20	29	24	26	1.99
8523--8772	100	2.4	104	88	6	357	20	29	24	26	1.99
8867--8898	13	2.5	13	94	0	55	56	12	0	31	1.37
9110--9167	30	1.9	30	89	0	89	31	24	3	41	1.71
16100--16337	49	4.6	50	83	6	257	21	29	23	25	1.99
16099--16346	99	2.4	103	86	7	335	20	29	23	26	1.99
16441--16472	13	2.5	13	94	0	55	56	12	0	31	1.37
16684--16740	30	1.9	29	85	3	78	31	24	1	42	1.65
23800--23990	64	3.0	63	86	1	229	31	12	20	35	1.90
32690--32722	3	11.0	3	100	0	66	33	0	0	66	0.92
33030--33159	64	2.0	64	86	0	179	33	14	19	33	1.92
35006--35051	24	1.9	24	81	0	56	63	2	4	30	1.26
35015--35098	28	3.1	27	75	10	82	64	1	3	30	1.18
35757--35863	52	2.1	52	84	7	137	50	8	1	39	1.44
36002--36058	14	3.9	15	72	6	55	57	5	17	19	1.58
36455--36493	18	2.1	18	85	4	51	46	0	7	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45853--45892	21	1.9	21	89	0	62	52	5	30	12	1.60
46934--46986	21	2.4	23	81	6	65	39	0	7	52	1.30
49071--49099	14	2.1	14	93	6	51	58	0	0	41	0.98
55712--55768	24	2.4	24	84	0	60	29	10	17	42	1.83
60214--60265	19	2.6	20	81	6	61	50	23	9	17	1.75
61049--61082	18	1.9	18	88	5	52	17	44	26	11	1.83
63608--63650	21	2.1	20	82	4	50	13	16	20	48	1.80
63886--63910	13	1.9	13	100	0	50	32	0	4	64	1.12
64994--65029	13	2.8	14	84	16	51	27	25	0	47	1.52
64981--65021	18	2.2	19	87	12	59	29	24	0	46	1.53
65144--65278	39	3.4	39	73	10	114	27	27	20	25	1.99
65518--65556	18	2.1	19	90	4	62	48	10	0	41	1.37
66871--66927	5	11.0	5	78	14	62	56	1	0	42	1.10
66870--66925	12	4.5	12	81	16	69	55	1	0	42	1.10
66872--66927	26	2.2	26	90	6	69	55	1	0	42	1.10
68832--68863	12	2.7	12	100	0	64	21	40	18	18	1.91
68983--69036	16	3.2	17	77	15	51	35	1	3	59	1.26
70528--70562	18	1.9	18	94	0	61	51	5	0	42	1.25
85343--85784	130	3.5	126	80	5	467	37	19	16	26	1.93
87686--87883	89	2.2	88	88	2	281	31	19	21	27	1.97
87743--88017	45	6.2	44	75	15	153	28	22	19	29	1.98
87720--88171	89	5.1	89	72	10	320	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87830--88017	45	4.2	45	86	4	247	27	22	19	29	1.98
87807--88775	268	3.6	266	83	4	967	27	21	19	30	1.98
88100--88730	45	14.2	45	67	18	175	28	21	18	32	1.97
87807--88689	134	6.6	134	78	8	821	27	21	19	31	1.97
87808--88555	268	2.8	267	87	3	1026	28	21	19	31	1.97
87816--88775	267	3.6	267	83	4	940	27	21	19	30	1.98
88891--89012	64	1.9	64	85	6	167	35	18	17	28	1.94
99930--100366	129	3.4	128	81	6	492	36	20	16	26	1.94
103811--103855	23	2.0	23	82	8	56	37	8	13	40	1.76
112932--112965	17	2.0	17	94	0	59	73	0	2	23	0.97
113061--113114	16	3.5	16	73	16	60	50	0	5	44	1.25
113890--113920	15	2.0	16	93	6	55	45	0	16	38	1.47
114282--114377	18	5.3	18	88	0	102	39	7	13	39	1.72
124848--124929	34	2.4	33	78	6	76	26	23	21	28	1.99
130105--130282	27	6.6	27	84	3	205	29	28	15	26	1.96
130126--130281	82	1.9	81	88	3	233	29	28	15	26	1.96
132125--132198	37	2.0	37	84	10	98	40	2	2	54	1.29
137537--137619	19	4.2	20	77	19	68	55	6	0	38	1.25
137564--137610	24	2.0	24	87	8	69	53	4	0	42	1.20
137593--137630	20	1.9	19	89	5	58	63	5	0	31	1.17
141970--142193	40	5.6	40	87	7	312	23	23	28	24	1.99
141970--142193	82	2.8	81	88	7	332	23	23	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149791--149994	40	5.1	40	90	4	306	23	23	27	25	2.00
150953--151045	47	2.0	47	100	0	186	40	9	15	34	1.79
153440--153479	15	2.8	14	88	11	55	62	0	35	2	1.09
153631--153706	31	2.5	31	75	14	77	34	1	0	64	1.02
154921--154987	29	2.3	29	80	10	75	38	0	8	52	1.33

Tables:   1

The End!