genome.fa.s239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2112
Parameters: 2 7 7 80 10 50 1000
Length:  102076

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5327--5434	26	4.2	26	93	0	189	32	7	24	36	1.83
6746--6778	18	1.9	17	88	11	50	33	18	36	12	1.88
7012--7166	27	5.9	26	84	10	192	18	24	22	34	1.96
7012--7148	53	2.6	51	92	6	215	17	24	24	34	1.96
12350--12454	26	4.2	26	89	4	162	33	6	23	36	1.81
12350--12454	51	2.1	50	91	5	167	33	6	23	36	1.81
14054--14194	27	5.2	27	73	11	128	19	22	22	34	1.96
14058--14194	54	2.5	54	89	4	197	20	22	21	35	1.96
14073--14194	27	4.5	27	78	13	135	18	22	22	36	1.95
14054--14212	27	5.9	26	80	10	115	20	23	21	34	1.97
25718--26032	39	8.1	39	93	0	504	24	29	24	21	1.99
34617--34838	40	5.6	40	91	1	349	28	25	22	23	1.99
37343--37519	40	4.4	40	94	0	309	21	19	29	29	1.97
48799--48975	40	4.4	40	94	0	309	22	19	29	28	1.98
48829--48995	80	2.1	80	90	0	262	23	22	27	25	2.00
63321--63710	27	14.7	26	72	13	158	39	19	7	33	1.81
63501--63710	54	3.9	55	85	5	284	40	19	8	32	1.81
63501--63710	109	1.9	109	86	3	298	40	19	8	32	1.81
63502--63848	27	12.8	27	85	3	258	37	20	12	28	1.90
63668--63930	81	3.2	80	85	3	339	34	22	18	24	1.96
63695--63970	27	10.3	27	86	1	376	34	21	19	23	1.96
64397--64461	22	3.0	22	75	8	60	20	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71878--71985	26	4.2	26	89	0	171	32	8	24	35	1.85
74229--74378	41	3.7	41	82	1	203	28	26	23	22	1.99
82484--82632	41	3.7	41	83	3	212	28	28	22	20	1.99
85304--85444	27	5.2	27	82	11	182	18	24	23	33	1.97
85301--85444	54	2.7	54	94	2	245	18	25	23	33	1.97
85304--85462	27	5.9	26	81	2	104	20	24	22	33	1.97
87499--87711	46	4.8	46	75	11	196	28	30	19	21	1.97
94088--94149	27	2.3	27	80	5	72	22	24	17	35	1.95
94180--94428	27	9.3	27	77	11	165	31	8	19	40	1.81
94407--94557	27	5.8	27	83	6	179	40	7	21	29	1.82
100588--100678	24	3.6	25	74	18	82	45	16	7	30	1.75
100589--100687	26	3.9	26	73	13	82	42	18	7	32	1.77
100685--100766	28	3.0	26	77	12	83	41	15	8	34	1.78

Tables:   1

The End!