genome.fa.s2477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2715
Parameters: 2 7 7 80 10 50 1000
Length:  41605

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93--341	42	5.9	42	79	10	269	20	34	28	17	1.95
93--345	83	3.0	82	76	11	241	20	33	28	17	1.95
8241--8333	42	2.2	43	90	3	143	19	39	27	12	1.88
8321--8369	25	2.0	25	91	0	80	18	46	22	12	1.82
8346--9385	43	24.6	41	76	7	766	18	33	32	16	1.93
8368--8446	34	2.3	34	93	2	131	18	37	35	7	1.80
8375--9385	128	8.0	128	77	6	895	17	33	32	16	1.93
8580--9314	298	2.5	298	91	2	1165	17	32	32	16	1.93
8410--9385	85	11.5	86	82	4	851	17	33	32	16	1.93
9390--9468	24	3.3	24	85	5	106	20	35	37	6	1.78
9677--9926	42	5.9	42	79	9	269	20	34	28	17	1.95
13712--13765	28	2.0	27	82	10	67	11	48	40	0	1.39
14646--14701	27	2.0	29	82	6	71	5	26	67	0	1.11
17765--18863	41	26.2	43	76	11	603	18	35	46	0	1.50
17843--17891	25	2.0	25	95	0	89	18	46	34	0	1.49
17890--17980	33	2.7	33	93	3	146	19	35	45	0	1.51
17930--18878	41	23.0	41	80	8	1034	18	34	47	0	1.49
18392--18506	24	5.4	24	64	26	87	17	33	48	0	1.47
18881--18959	24	3.3	24	85	5	106	20	35	44	0	1.52
19166--19397	123	1.9	124	90	4	371	20	35	44	0	1.52
19166--19414	42	6.0	42	84	7	332	20	35	44	0	1.52
19171--19425	83	3.1	80	78	13	293	20	34	45	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20475--20517	22	2.0	21	82	17	52	9	30	60	0	1.28
22815--23109	145	2.0	146	96	3	551	17	34	47	0	1.48
23622--23675	28	1.9	28	85	7	74	22	27	50	0	1.50
27157--27205	25	2.0	25	95	0	89	18	46	34	0	1.49
27204--27285	32	2.4	34	94	6	141	19	35	45	0	1.51
27342--27432	41	2.2	42	90	5	141	19	40	39	0	1.52
27420--27468	25	2.0	25	95	0	89	18	46	34	0	1.49
27467--27542	29	2.5	32	91	6	122	18	36	44	0	1.50
27029--27553	263	2.0	260	91	8	856	20	36	43	0	1.52
27029--27690	259	2.5	259	85	11	797	19	36	43	0	1.51
27445--28337	244	3.7	243	84	7	1033	18	34	46	0	1.50
28021--28047	9	3.0	9	100	0	54	11	22	66	0	1.22
27504--28443	83	11.5	82	82	8	937	18	34	47	0	1.49
28148--28286	34	3.7	34	69	27	102	20	33	46	0	1.51
27504--28443	41	23.0	41	78	9	935	18	34	47	0	1.49
28455--28516	23	2.7	23	92	2	97	17	37	45	0	1.49
28446--28523	24	3.3	23	83	8	95	20	35	43	0	1.52
28768--29007	41	5.9	39	79	10	209	20	35	43	0	1.52
28723--29007	42	6.9	42	83	10	356	20	35	44	0	1.52
30065--30107	22	2.0	21	82	17	52	9	30	60	0	1.28
32743--32796	28	2.0	27	82	10	67	11	48	40	0	1.39
36796--37888	41	26.2	42	75	13	495	18	35	46	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36873--36921	24	2.0	24	96	0	89	18	48	32	0	1.48
36920--37014	33	2.9	33	88	3	138	18	36	44	0	1.51
36829--36952	66	1.9	64	93	3	203	18	42	38	0	1.51
37116--37140	8	3.1	8	100	0	50	12	24	64	0	1.27
36897--37888	248	4.1	246	84	7	1145	18	34	46	0	1.49
37421--37535	24	5.4	24	64	26	87	17	33	48	0	1.47
36924--37832	289	3.2	289	88	5	1238	18	34	47	0	1.49
37906--37984	24	3.3	24	85	5	106	20	35	44	0	1.52
38186--38479	41	7.2	41	81	12	324	20	34	44	0	1.52
38219--38451	120	1.9	124	89	6	370	20	35	44	0	1.52
39520--39564	21	2.1	21	84	15	58	11	31	57	0	1.33

Tables:   1

The End!