Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1968
Parameters: 2 7 7 80 10 50 1000
Length:  34256

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--847
19
1.9
19
88
5
56
69
5
8
16
1.33
841--2190
391
3.4
393
95
3
2373
42
15
11
30
1.83
4938--4984
21
2.2
22
92
3
78
21
19
38
21
1.94
5832--13968
399
20.5
399
96
2
14843
42
14
11
30
1.82
5832--13968
797
10.2
800
96
2
14963
42
14
11
30
1.82
14058--14082
13
1.9
13
100
0
50
36
16
32
16
1.90
15464--15495
13
2.5
13
94
0
55
81
3
3
12
0.93
16394--16448
5
11.0
5
75
21
53
78
3
16
1
0.98
16387--16448
15
4.2
14
84
10
79
77
4
16
1
1.02
16528--16598
30
2.4
31
81
11
85
61
1
23
12
1.39
16522--16591
24
2.9
24
74
6
61
62
1
24
11
1.36
18395--18560
27
6.1
27
87
0
233
23
19
21
34
1.96
18394--18560
54
3.1
54
91
0
262
23
19
21
35
1.96
18546--18617
27
2.7
27
93
0
117
26
4
25
44
1.72
18413--18590
81
2.2
81
85
2
232
23
16
23
37
1.94
18438--18609
81
2.1
81
83
4
213
24
13
23
38
1.90
18666--18764
25
4.0
25
84
11
132
40
6
22
31
1.78
18771--18865
27
3.5
27
79
0
100
30
6
21
42
1.77
24535--24732
77
2.5
76
86
5
254
26
28
21
23
1.99
24535--24732
39
5.1
39
86
4
251
26
28
21
23
1.99
34122--34241
40
2.8
41
79
17
122
29
26
20
24
1.99
34130--34220
43
2.2
39
83
13
103
31
24
17
26
1.97

Tables:   1

The End!