genome.fa.s2645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2092
Parameters: 2 7 7 80 10 50 1000
Length:  64488

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587--1877	42	6.9	42	80	9	310	17	28	34	19	1.95
2086--2164	24	3.3	24	85	5	106	6	37	35	20	1.78
2182--3324	43	27.2	43	78	8	846	16	31	34	17	1.92
2169--3180	43	23.9	43	78	6	994	16	32	33	17	1.93
2169--3324	85	13.7	84	80	7	763	16	31	34	18	1.92
2182--3207	256	4.0	254	83	5	1047	16	31	33	17	1.93
2240--2975	299	2.5	299	92	1	1201	16	32	32	17	1.93
3109--3187	34	2.3	34	93	2	131	7	35	37	18	1.80
3174--3242	35	2.0	35	91	0	111	13	26	43	17	1.85
11223--11514	42	6.9	42	80	9	319	17	28	34	19	1.95
11724--11802	24	3.3	24	85	5	106	6	37	35	20	1.78
11807--12818	43	23.9	43	78	5	1003	16	32	33	17	1.93
11807--12818	85	12.0	86	83	3	1003	16	32	33	17	1.93
11822--12849	256	4.1	253	83	5	1045	16	32	33	17	1.93
11878--12818	299	3.2	299	87	4	1209	16	32	33	18	1.93
12746--12825	35	2.3	34	89	6	124	7	35	37	20	1.81
12792--12917	68	1.9	67	91	1	207	12	26	44	16	1.84
12860--12952	42	2.2	44	90	3	145	12	27	39	19	1.88
20856--21147	42	6.9	42	80	9	319	17	28	34	19	1.95
21356--21434	24	3.3	24	85	5	106	6	37	35	20	1.78
21439--22449	43	23.9	43	78	6	994	16	32	33	17	1.93
21439--22449	85	12.0	86	82	3	994	16	32	33	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21452--22480	256	4.1	253	84	5	1058	16	31	33	17	1.93
21510--22449	299	3.2	299	87	4	1209	16	32	33	17	1.93
22378--22456	34	2.3	34	93	2	131	7	35	37	18	1.80
22453--22508	28	2.0	28	92	0	94	8	19	51	19	1.73
22494--22586	42	2.2	44	90	3	145	12	27	39	19	1.88
30488--30779	42	6.9	42	80	9	319	17	28	34	19	1.95
30988--31066	24	3.3	24	85	5	106	6	37	35	20	1.78
31084--32109	43	24.3	43	78	6	781	16	32	33	17	1.93
31071--32080	85	12.0	86	82	4	994	16	32	33	17	1.93
31084--32109	256	4.1	253	84	5	1052	16	32	33	17	1.93
31142--32080	299	3.2	299	87	4	1209	16	32	33	17	1.93
32009--32087	34	2.3	34	93	2	131	7	35	37	18	1.80
32086--32134	25	2.0	25	91	0	80	12	22	46	18	1.82
32122--32214	42	2.2	44	90	3	145	12	27	39	19	1.88
40118--40409	42	6.9	42	80	9	319	17	28	34	19	1.95
40618--40696	24	3.3	24	85	5	106	6	37	35	20	1.78
40701--41676	85	11.5	84	81	7	719	16	32	33	17	1.93
40701--41711	43	23.9	43	77	7	946	16	32	33	17	1.93
40772--41506	298	2.5	298	91	3	1160	16	32	32	17	1.93
40714--41741	255	4.1	254	83	5	1054	16	32	33	17	1.93
41640--41718	34	2.3	34	93	2	131	7	35	37	18	1.80
41717--41765	24	2.0	24	92	0	80	10	22	48	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41752--41844	42	2.2	44	90	3	145	12	27	39	19	1.88
49766--50057	42	6.9	42	80	9	319	17	28	34	19	1.95
50265--50343	24	3.3	24	85	5	106	6	37	35	20	1.78
50348--51358	43	23.9	43	77	6	976	16	32	33	17	1.93
50348--51358	85	12.0	84	81	5	719	16	32	33	17	1.93
50348--51323	170	5.7	170	81	4	893	16	31	33	17	1.93
50348--51358	128	8.0	128	78	5	968	16	32	33	17	1.93
50419--51153	298	2.5	299	92	1	1192	16	32	33	17	1.93
51287--51365	34	2.3	34	93	2	131	7	35	37	18	1.80
51364--51412	25	2.0	25	91	0	80	12	22	46	18	1.82
51400--51492	42	2.2	44	90	3	145	12	27	39	19	1.88
60427--60591	45	3.6	44	71	14	138	15	33	33	18	1.92

Tables:   1

The End!