genome.fa.s2679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1599
Parameters: 2 7 7 80 10 50 1000
Length:  28956

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92--143	22	2.3	22	80	3	59	38	25	5	30	1.79
104--187	43	1.9	45	82	4	109	40	21	4	33	1.74
108--1853	45	38.5	46	66	16	173	37	23	6	32	1.81
4--10109	46	221.8	46	71	13	4948	36	24	7	32	1.82
581--712	67	1.9	69	87	7	198	36	22	7	33	1.83
4--8676	23	383.8	22	69	16	3120	36	24	7	32	1.82
1505--1555	24	2.2	24	89	3	77	39	21	5	33	1.78
333--1852	68	22.3	70	68	19	362	36	24	6	32	1.81
1976--2017	20	2.2	20	91	4	68	40	19	4	35	1.72
2130--2279	71	2.2	68	81	14	182	36	22	6	36	1.79
2154--2279	24	5.4	22	74	15	85	36	22	7	34	1.81
3979--4050	28	2.8	25	85	8	83	33	26	5	34	1.80
3770--7516	182	20.7	176	73	13	924	36	24	6	31	1.82
3932--9296	23	234.1	23	72	15	2360	36	24	6	32	1.82
4647--9273	204	22.7	200	74	13	1128	36	24	6	31	1.82
9401--9438	14	2.6	14	95	4	67	36	18	7	36	1.80
9363--9486	59	2.1	60	86	1	169	35	21	6	36	1.80
9417--9728	23	13.7	22	73	12	116	36	22	7	34	1.81
9604--9758	44	3.5	44	82	7	161	35	23	6	34	1.80
9812--10109	23	13.0	23	77	10	272	36	24	7	32	1.82
13505--13545	21	2.0	21	81	18	50	31	19	26	21	1.97
15124--23923	23	387.0	22	71	14	2872	36	24	7	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15216--24226	46	196.3	46	75	9	5966	36	24	7	32	1.82
15216--24226	69	130.9	69	73	11	5751	36	24	7	32	1.82
15286--24226	206	43.3	205	80	8	3523	36	24	7	31	1.82
16984--24133	229	31.5	229	86	6	2782	36	24	7	32	1.82
23983--24226	23	10.7	23	75	10	180	37	23	6	32	1.81

Tables:   1

The End!