Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2336
Parameters: 2 7 7 80 10 50 1000
Length:  40276

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3922--3965
18
2.3
19
84
11
63
47
0
9
43
1.35
6894--6936
19
2.3
19
87
0
59
48
0
9
41
1.35
7519--7561
1
43.0
1
100
0
86
0
0
0
100
0.00
1--10596
509
21.1
496
73
18
5519
35
15
13
35
1.87
12084--12174
25
3.6
24
87
10
128
30
6
24
38
1.81
12071--12167
25
3.9
25
82
13
121
30
4
25
39
1.75
16063--16128
29
2.4
28
82
14
84
33
30
7
28
1.85
18786--18827
20
2.3
19
88
12
61
50
4
0
45
1.23
20779--20821
20
2.3
19
88
8
61
46
6
0
46
1.30
17649--40276
500
45.1
507
92
4
36980
35
13
15
36
1.86
21278--21319
19
2.3
19
91
4
68
50
7
0
42
1.30
21288--21331
19
2.4
18
85
7
54
59
11
0
29
1.32
22283--22324
17
2.2
20
84
16
63
47
7
0
45
1.30
23295--23338
20
2.2
20
88
11
65
47
6
2
43
1.42
24301--24343
20
2.2
20
92
8
72
48
6
0
44
1.29
25310--25353
20
2.2
20
88
11
65
47
6
2
43
1.42
26310--26353
20
2.2
20
88
11
65
47
6
2
43
1.42
27314--27356
20
2.3
19
88
8
61
46
6
0
46
1.30
28809--28850
20
2.2
20
88
12
63
47
7
0
45
1.30
29812--29854
20
2.3
19
88
8
61
46
6
0
46
1.30
32323--32365
20
2.3
19
88
8
61
46
6
0
46
1.30
33325--33367
19
2.3
19
88
8
61
46
6
2
44
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34829--34872
20
2.2
20
88
4
63
47
6
0
45
1.29
35335--35378
20
2.2
20
88
11
65
47
6
2
43
1.42
36340--36383
20
2.2
20
88
11
65
47
6
2
43
1.42
39340--39382
20
2.2
20
88
8
63
46
6
0
46
1.30

Tables:   1

The End!