Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1421
Parameters: 2 7 7 80 10 50 1000
Length:  311925

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205726--205822
30
3.2
30
75
2
106
28
15
26
28
1.96
207999--208029
12
2.6
12
100
0
62
25
16
12
45
1.83
208090--208139
6
8.2
6
81
16
50
2
20
2
76
0.99
208079--208149
37
1.9
37
86
11
101
2
18
2
76
1.04
208075--208135
16
3.8
16
77
14
63
3
19
1
75
1.03
210062--210158
30
3.2
30
75
2
106
28
15
26
28
1.96
212336--212386
22
2.3
21
83
6
57
35
35
1
27
1.68
212341--212403
21
3.0
21
83
2
72
33
33
3
30
1.74
213008--213104
30
3.2
30
73
2
88
30
13
25
29
1.94
219420--219466
20
2.3
20
85
0
67
29
36
12
21
1.91
234631--234778
67
2.2
67
80
8
167
32
16
29
21
1.96
234653--234836
67
2.8
64
77
8
194
29
17
29
22
1.97
235739--235794
25
2.3
23
81
6
67
21
16
10
51
1.74
242194--242281
30
2.9
30
78
9
90
28
17
25
29
1.97
248333--248369
12
2.9
13
88
8
58
75
5
2
16
1.10
248349--248382
17
1.9
18
88
5
52
76
5
5
11
1.14
248349--248382
18
2.0
16
88
11
50
76
5
5
11
1.14
249412--249467
30
1.9
28
85
7
76
53
3
30
12
1.55
253764--253808
14
3.3
14
78
6
56
48
15
0
35
1.45
254274--254362
29
3.1
29
96
0
160
41
30
0
28
1.56
254292--254362
14
4.9
14
74
6
70
40
32
0
26
1.56
254280--254356
15
5.3
15
73
6
77
42
28
0
28
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
254919--254962
19
2.3
19
96
0
79
20
18
29
31
1.96
257051--257132
30
2.7
30
81
9
87
9
21
2
65
1.34
257200--257256
5
11.0
5
75
20
55
1
19
1
77
0.95
257200--257256
16
3.7
14
82
15
60
1
19
1
77
0.95
259375--259417
17
2.5
17
84
0
50
27
27
11
32
1.92
259814--259910
30
3.2
30
76
2
106
27
16
27
27
1.97
260942--260979
19
2.0
19
85
10
51
52
7
5
34
1.53
262073--262111
20
2.0
20
100
0
78
46
12
15
25
1.81
262842--262898
12
4.8
12
73
0
51
10
28
0
61
1.29
262849--262898
18
2.8
18
90
0
82
12
28
0
60
1.32
262902--262998
42
2.3
42
89
1
142
14
22
5
57
1.57
267827--267876
18
2.8
18
90
0
82
12
28
0
60
1.32
267880--267973
42
2.3
41
88
3
143
14
24
5
55
1.60
267887--267954
21
3.2
21
65
8
57
11
23
7
57
1.59
268544--268640
30
3.2
29
71
8
79
28
27
15
27
1.96
272585--272613
15
1.9
15
100
0
58
27
0
6
65
1.18
273822--273859
19
2.0
19
85
10
51
52
7
5
34
1.53
273996--274043
20
2.4
20
71
0
51
31
16
29
22
1.96
275779--275826
20
2.4
20
71
0
51
31
20
27
20
1.98
276614--276655
22
2.0
21
81
13
50
47
26
11
14
1.78
280491--280587
30
3.2
30
77
2
97
29
25
15
28
1.96
283154--283193
16
2.6
15
88
4
53
80
5
15
0
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283154--283216
11
5.9
11
71
17
53
77
3
15
3
1.02
283171--283216
16
3.1
14
82
14
56
76
2
17
4
1.06
283290--283352
24
2.6
24
79
0
72
63
0
25
11
1.27
283290--283334
12
3.8
12
81
0
54
66
0
24
8
1.20
286029--286076
20
2.4
20
71
0
51
31
16
29
22
1.96
287312--287344
12
2.8
12
86
4
50
51
9
3
36
1.49
287376--287422
20
2.3
21
85
3
60
31
21
25
21
1.98
288894--288965
30
2.4
29
84
6
90
29
26
12
31
1.93
296217--296323
56
1.9
56
86
3
153
25
21
12
41
1.87
296947--297001
20
2.8
20
88
0
83
29
16
29
25
1.97
298286--298326
15
2.7
16
74
11
50
7
26
0
65
1.18
299547--299664
55
2.1
55
84
6
159
25
22
13
38
1.90
300288--300342
20
2.8
20
88
0
83
29
16
29
25
1.97
300901--300978
30
2.6
30
72
8
77
28
17
25
28
1.98
302708--303204
248
2.0
248
91
0
807
34
22
15
26
1.94
309160--309227
21
3.2
21
65
8
57
58
7
22
11
1.57
309138--309234
42
2.3
42
91
1
151
56
5
23
14
1.58
309238--309287
18
2.8
18
87
0
73
58
0
28
14
1.37
309231--309312
24
3.4
24
77
0
101
60
0
26
12
1.31
309229--309349
48
2.5
48
80
5
120
60
0
26
12
1.38
309305--309343
18
2.1
19
85
4
53
66
2
23
7
1.30
310935--310959
10
2.5
10
100
0
50
12
24
28
36
1.91

Tables:   1   2

The End!