genome.fa.s2972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2029
Parameters: 2 7 7 80 10 50 1000
Length:  36857

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3481--3599	40	3.0	41	84	7	149	23	21	26	27	1.99
7740--7770	7	4.4	7	100	0	62	29	0	54	16	1.42
10666--10690	12	2.1	12	100	0	50	16	8	24	52	1.70
16397--16566	43	4.0	43	76	10	170	32	25	15	25	1.96
16392--16552	85	1.9	85	86	10	231	32	25	16	25	1.96
18216--18276	27	2.3	26	82	2	68	44	19	8	27	1.79
18191--18292	26	3.9	26	76	5	82	39	21	10	28	1.87
18298--18453	27	5.8	27	84	3	174	29	23	6	41	1.79
18269--18453	80	2.3	81	81	8	189	29	22	8	40	1.82
18284--18453	81	2.1	80	84	7	220	27	23	7	41	1.81
18458--18742	27	10.6	27	84	3	324	35	19	18	26	1.95
19187--19251	22	3.0	22	80	8	78	20	23	23	33	1.97
19393--19492	27	3.7	27	82	5	103	21	24	19	36	1.95
19652--19748	6	15.8	6	72	16	74	20	17	14	47	1.82
19637--19739	31	3.3	31	91	0	161	19	17	13	49	1.79
21720--22059	27	12.7	26	76	9	104	34	21	9	34	1.86
21695--21833	27	5.3	27	75	5	97	37	20	10	31	1.86
21773--21957	80	2.3	81	82	8	198	30	22	8	39	1.83
21802--21957	54	2.9	54	83	8	203	29	23	6	41	1.79
21962--22300	27	12.6	27	84	2	396	34	20	18	26	1.96
22745--22809	22	3.0	22	80	8	78	20	23	23	33	1.97
22968--23069	27	3.8	27	84	5	125	19	23	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23228--23324	6	15.8	6	72	16	65	22	17	12	47	1.81
23205--23316	31	3.6	31	90	1	152	22	16	10	50	1.75
25297--25410	27	4.3	27	75	3	88	37	20	10	31	1.86
25350--25518	80	2.1	82	81	6	202	32	22	6	38	1.80
25365--25534	27	6.3	27	81	6	202	29	24	5	40	1.79
25365--25534	81	2.1	80	85	3	234	29	24	5	40	1.79
25526--25635	27	4.1	26	76	15	98	39	23	10	27	1.86
25547--25867	27	11.9	27	82	5	346	33	20	19	26	1.96
25547--25867	134	2.4	134	84	5	391	33	20	19	26	1.96
27234--27416	40	4.6	41	89	4	234	24	26	23	25	2.00
27234--27416	79	2.3	81	84	4	248	24	26	23	25	2.00
35232--35331	40	2.6	40	79	4	98	24	27	24	25	2.00
35267--35446	40	4.6	39	86	8	233	24	27	23	24	2.00
35267--35446	77	2.3	77	84	9	231	24	27	23	24	2.00

Tables:   1

The End!