genome.fa.s302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2034
Parameters: 2 7 7 80 10 50 1000
Length:  68337

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2600--2692	42	2.2	43	90	3	143	19	39	27	12	1.88
2679--2727	24	2.0	24	92	0	80	18	48	22	10	1.77
2726--2804	34	2.3	34	93	2	131	18	37	35	7	1.80
2768--3743	43	22.9	42	77	7	885	18	33	32	16	1.93
2768--3730	85	11.3	84	82	5	763	17	33	32	16	1.93
2733--3743	170	6.0	169	80	6	866	18	33	32	16	1.93
2768--3737	128	7.6	128	77	7	749	18	33	32	16	1.93
2938--3672	298	2.5	297	91	2	1172	18	32	32	16	1.93
3748--3826	24	3.3	24	85	5	106	20	35	37	6	1.78
4033--4282	42	5.9	42	79	9	269	20	34	28	17	1.95
12179--12271	42	2.2	43	90	3	143	19	39	27	12	1.88
12257--12308	25	2.1	25	92	0	86	17	51	21	9	1.73
12282--13269	43	23.4	42	77	7	811	17	33	32	16	1.93
12306--12384	34	2.3	34	93	2	131	18	37	35	7	1.80
12282--13184	256	3.6	254	85	4	1089	17	33	32	16	1.92
12518--13253	299	2.5	298	92	1	1190	17	32	32	16	1.93
12348--13269	85	10.8	85	82	3	885	17	33	32	16	1.93
16928--17006	24	3.3	24	85	5	106	20	35	37	6	1.78
17216--17465	42	5.9	42	79	9	269	20	34	28	17	1.95
25368--25460	42	2.2	43	90	3	143	19	39	27	12	1.88
25448--25496	25	2.0	25	91	0	80	18	46	22	12	1.82
25473--26513	43	24.6	42	77	7	858	18	33	31	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25495--25573	34	2.3	34	93	2	131	18	37	35	7	1.80
25473--26373	256	3.6	254	85	4	1085	17	33	32	16	1.93
25707--26442	299	2.5	298	92	1	1190	18	32	32	16	1.93
25537--26513	85	11.5	86	83	2	933	18	33	32	16	1.93
26518--26596	24	3.3	24	85	5	106	20	35	37	6	1.78
26805--27054	42	5.9	42	79	9	269	20	34	28	17	1.95
34956--35048	42	2.2	43	90	3	143	19	39	27	12	1.88
35036--35084	25	2.0	25	91	0	80	18	46	22	12	1.82
35061--36100	43	24.6	42	76	8	835	17	33	32	16	1.93
35083--35161	34	2.3	34	93	2	131	18	37	35	7	1.80
35295--36029	299	2.5	297	91	2	1174	17	32	32	16	1.93
35125--36100	85	11.5	86	83	3	910	17	33	32	16	1.93
36105--36183	24	3.3	24	85	5	106	20	35	37	6	1.78
36424--36480	29	2.0	29	100	0	114	10	31	40	17	1.84
36455--36668	84	2.5	85	78	10	231	19	34	28	17	1.95
36457--36667	42	5.0	42	78	9	189	19	34	27	17	1.95
44570--44662	42	2.2	43	90	3	143	19	39	27	12	1.88
44650--44698	25	2.0	25	91	0	80	18	46	22	12	1.82
44675--45712	43	24.6	41	76	8	750	17	33	32	16	1.93
44697--44775	34	2.3	34	93	2	131	18	37	35	7	1.80
44675--45573	255	3.5	253	84	5	1036	17	33	32	16	1.93
44909--45641	298	2.5	297	91	3	1156	17	32	32	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44739--45712	85	11.5	84	80	7	696	17	33	32	16	1.93
45717--45795	24	3.3	24	85	5	106	20	35	37	6	1.78
46003--46252	42	5.9	42	79	9	269	20	34	28	17	1.95
54249--54324	34	2.2	35	86	6	102	18	36	38	6	1.77
54283--54703	123	3.3	123	73	16	371	19	32	31	16	1.94
54333--54889	82	6.7	84	74	15	426	18	31	32	17	1.94
54291--55243	43	22.7	43	69	15	346	18	32	31	17	1.94
54291--55247	42	22.8	42	71	14	509	18	32	31	17	1.94
54291--54889	257	2.4	243	83	9	719	18	31	32	17	1.94
54873--55246	170	2.2	168	81	7	427	18	33	31	16	1.94
55258--55321	23	2.8	23	92	0	101	18	37	35	7	1.80
55536--55787	42	5.9	42	77	11	239	21	33	28	17	1.95
64693--64795	39	2.5	40	80	12	120	16	30	34	18	1.93
65242--65318	24	3.2	24	77	18	72	20	36	35	7	1.82
65259--65320	24	2.6	25	84	5	83	20	35	38	4	1.74

Tables:   1

The End!