genome.fa.s323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1234
Parameters: 2 7 7 80 10 50 1000
Length:  51652

Tables:   1   2   

This is table  1  of  2  ( 210 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139--163	11	2.3	11	100	0	50	76	0	0	24	0.80
640--732	23	4.0	24	87	10	131	26	22	21	29	1.99
781--848	20	3.3	20	89	4	109	32	22	11	33	1.90
8387--8446	31	1.9	31	93	0	102	25	23	16	35	1.95
8656--8751	47	2.1	46	94	2	165	29	20	20	29	1.98
8635--8752	24	5.0	24	88	7	170	27	22	21	28	1.99
8802--8867	20	3.3	20	89	4	107	33	21	12	33	1.90
12349--12422	30	2.5	29	91	4	121	37	5	5	51	1.48
12349--12432	30	2.9	30	89	3	118	39	5	8	46	1.58
14607--14830	40	5.6	39	87	4	272	25	27	21	25	2.00
14607--14830	79	2.8	78	82	7	281	25	27	21	25	2.00
14607--14830	119	1.9	119	84	7	303	25	27	21	25	2.00
20250--20289	20	2.0	20	85	0	53	40	15	5	40	1.68
20872--20902	12	2.6	12	100	0	62	41	16	6	35	1.74
31823--31852	15	2.0	15	93	0	51	50	13	23	13	1.77
44784--44841	30	1.9	30	82	0	71	29	24	6	39	1.81
45290--45358	12	5.8	12	73	8	61	78	0	21	0	0.76
45283--45354	25	2.8	25	75	21	51	77	0	22	0	0.76
45338--45399	6	9.7	6	74	19	54	75	0	24	0	0.80
45285--45399	11	9.3	12	70	17	67	75	0	24	0	0.80
45297--45399	37	2.5	41	81	15	115	74	0	25	0	0.82
45285--45403	37	3.5	32	75	21	107	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45291--45441	45	3.6	43	78	11	136	71	0	27	0	0.91
45387--45438	20	2.8	18	78	13	52	67	1	30	0	1.02
45410--45494	20	4.2	20	71	19	70	63	0	35	1	1.02
45350--45501	21	7.1	21	65	22	66	66	0	32	0	1.01
45509--45577	25	2.7	26	86	4	97	75	1	23	0	0.89
45471--45680	95	2.2	90	77	16	210	70	1	26	0	1.01
45576--45643	28	2.4	27	80	7	82	73	1	23	1	1.00
45576--45643	29	2.4	28	81	13	86	73	1	23	1	1.00
45606--45668	23	2.9	22	75	13	67	65	0	33	1	1.03
45498--45643	71	2.1	67	80	16	167	74	1	23	0	0.94
45507--45686	94	1.9	97	81	13	221	72	1	25	1	1.01
45684--45733	21	2.4	21	90	6	75	58	0	42	0	0.98
45684--45747	18	3.2	19	80	12	58	60	0	39	0	0.97
45725--45766	11	3.9	11	84	9	52	69	0	30	0	0.89
45748--45815	17	4.1	18	67	28	53	61	0	36	1	1.05
45741--45831	14	6.4	14	65	12	51	63	0	35	1	1.02
45743--45906	46	3.6	46	77	14	135	67	0	31	0	0.95
45743--45973	43	5.1	44	73	12	132	69	0	30	0	0.92
45836--45925	24	3.8	24	73	23	84	70	0	30	0	0.88
45840--45888	20	2.5	20	87	9	66	71	0	28	0	0.86
45836--45930	44	2.2	44	83	7	113	71	0	28	0	0.86
45789--45932	26	6.0	24	65	22	63	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45984--46030	21	2.2	21	88	3	67	76	0	23	0	0.78
45936--46061	17	8.5	14	71	13	67	74	0	25	0	0.82
45936--46068	15	7.9	15	69	26	72	74	0	25	0	0.82
46080--46106	9	3.0	9	100	0	54	66	0	33	0	0.92
46143--46357	17	12.1	17	67	21	86	72	0	27	0	0.85
46156--46221	25	2.6	25	74	9	71	74	0	25	0	0.82
46203--46473	9	28.2	9	63	20	52	74	0	25	0	0.85
46226--46303	19	4.4	19	74	25	66	73	0	26	0	0.84
46146--46303	50	3.0	50	76	16	140	74	0	25	0	0.83
46210--46361	79	1.9	80	83	11	197	72	0	27	0	0.85
46263--46345	30	2.9	27	78	18	80	68	0	31	0	0.90
46315--46732	44	9.6	43	67	20	153	74	0	25	0	0.84
46350--46393	16	2.7	16	85	3	61	75	0	25	0	0.81
46207--46606	119	3.4	118	74	14	317	71	0	28	0	0.89
46350--46415	16	4.4	15	71	24	50	74	0	24	1	0.91
46345--46855	65	7.5	66	67	22	183	74	0	24	0	0.84
46351--46479	12	10.0	13	72	16	83	77	0	21	0	0.82
46472--46521	14	3.5	14	74	20	50	58	0	42	0	0.98
46506--46577	36	2.0	34	87	12	101	62	0	37	0	0.95
46551--46799	22	10.8	22	68	17	114	79	0	20	0	0.76
46629--46805	1	177.0	1	78	0	102	84	0	15	0	0.67
46553--48520	90	21.7	86	63	21	247	73	0	25	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46148--46790	307	2.1	309	79	12	682	73	0	25	0	0.85
46796--46863	6	11.0	6	77	14	50	70	0	29	0	0.87
46751--46913	17	9.6	17	66	19	56	74	0	24	0	0.86
46553--47143	30	19.3	31	66	21	186	75	0	23	0	0.84
46630--46954	126	2.5	125	69	14	101	78	0	21	0	0.77
46554--47141	59	9.6	60	67	18	225	75	0	23	0	0.84
47000--47062	22	2.8	22	79	11	65	65	1	31	1	1.12
47058--47151	1	94.0	1	78	0	62	85	0	14	0	0.61
47044--47149	36	3.0	33	77	17	106	82	0	16	0	0.73
47041--47151	42	2.7	42	82	12	115	80	0	18	0	0.77
47063--47146	31	2.6	32	83	9	109	84	0	15	0	0.62
47065--47154	34	2.6	33	79	6	108	82	0	17	0	0.68
47058--47162	35	3.0	34	77	17	108	80	0	19	0	0.70
47109--47300	54	3.5	56	68	15	143	73	1	24	0	0.93
47071--47198	42	3.0	43	77	12	111	75	0	23	0	0.85
47099--47240	45	3.3	43	76	13	118	72	0	26	0	0.90
47229--47289	24	2.5	24	76	10	61	81	1	14	1	0.84
47222--47346	44	2.9	43	80	14	141	80	1	17	0	0.85
47222--47300	14	5.7	14	72	14	56	83	1	13	1	0.77
47216--47565	29	11.4	31	67	21	143	74	0	24	0	0.89
46554--47415	10	84.3	10	67	22	165	74	0	24	0	0.87
47220--48671	64	22.8	62	64	22	218	73	0	24	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47326--47533	42	4.9	43	70	12	126	73	0	25	0	0.87
47224--47588	106	3.5	105	75	14	274	74	0	24	0	0.89
47433--47492	12	4.9	12	74	13	52	71	0	28	0	0.86
47390--47592	37	5.4	37	70	19	118	72	0	27	0	0.89
47234--48744	16	94.4	16	63	18	141	73	0	25	0	0.91
47335--47554	123	1.8	120	81	13	279	73	0	26	0	0.87
47393--47565	68	2.5	67	80	13	192	72	0	26	0	0.88
47279--47632	189	1.9	185	80	8	412	71	0	27	0	0.91
47385--47591	85	2.4	88	80	7	212	72	0	27	0	0.88
47554--47593	21	1.9	21	84	0	53	67	0	32	0	0.91
47610--47682	25	3.0	23	75	11	74	71	0	28	0	0.87
47666--47854	59	3.2	58	75	15	181	71	1	26	0	0.96
47740--47806	24	3.0	23	81	10	68	71	1	26	0	0.94
47769--48520	23	32.1	23	65	23	130	75	0	23	0	0.87
47774--47932	5	32.2	5	73	15	59	79	0	19	0	0.76
47772--47926	56	2.6	58	82	11	167	79	0	20	0	0.78
47747--47930	60	3.0	58	76	16	176	77	0	21	0	0.80
47775--47933	59	2.6	60	79	15	168	79	0	19	0	0.76
47836--47931	1	96.0	1	76	0	57	84	0	15	0	0.63
47855--48016	84	1.9	84	82	9	204	75	0	24	0	0.85
47634--47982	196	1.8	194	79	10	414	72	0	26	0	0.91
47984--49138	29	40.1	28	65	15	122	74	0	24	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48008--48049	11	4.0	11	78	12	52	73	0	26	0	0.83
47848--48373	91	5.9	90	69	19	221	76	0	23	0	0.84
48089--48140	1	52.0	1	84	0	68	92	0	7	0	0.39
47999--49366	58	22.4	57	65	22	234	74	0	24	0	0.91
47961--48494	59	9.0	57	68	18	211	76	0	22	0	0.88
48176--48312	1	137.0	1	77	0	85	84	0	14	0	0.66
48080--48354	87	3.2	84	77	11	263	77	0	21	0	0.81
48088--48373	85	3.4	80	76	11	252	78	0	20	0	0.79
48386--48520	66	2.0	68	83	11	172	77	0	20	1	0.89
48389--48496	38	2.8	38	75	18	100	78	0	18	1	0.89

Tables:   1   2