genome.fa.s323.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1234
Parameters: 2 7 7 80 10 50 1000
Length:  51652

Tables:   1   2   

This is table  2  of  2  ( 210 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48061--48520	24	18.8	25	68	20	133	76	0	21	0	0.86
48509--48585	28	2.7	27	82	6	82	68	1	28	1	1.05
48441--48792	123	2.9	120	74	13	319	74	0	24	0	0.90
48563--48720	6	26.2	6	67	14	67	76	0	22	0	0.83
48561--48674	21	5.4	21	67	25	64	78	0	20	0	0.80
48578--48671	31	3.0	29	83	13	98	79	1	19	0	0.79
48569--48759	35	5.3	34	75	19	115	75	0	24	0	0.84
48612--48804	80	2.3	84	80	12	211	73	0	26	0	0.83
48699--48758	15	3.9	15	75	16	50	75	0	25	0	0.81
48579--48855	120	2.4	115	75	17	245	73	0	25	0	0.86
48562--48774	39	5.7	37	71	16	147	74	0	24	0	0.85
48689--49219	30	17.5	30	67	21	147	72	0	26	0	0.92
48800--48847	23	2.1	23	88	0	69	68	0	31	0	0.90
48810--48860	24	2.2	23	86	10	68	70	0	29	0	0.87
48826--48927	37	2.8	35	76	15	109	67	0	31	0	0.97
48908--49141	86	2.7	87	72	12	73	77	0	21	0	0.83
48905--49245	26	12.7	26	68	18	123	76	0	22	0	0.88
49061--49364	31	9.3	33	68	19	110	76	0	21	0	0.91
49061--49138	1	78.0	1	79	0	57	85	1	12	0	0.65
49210--49288	11	6.9	11	77	17	63	78	1	18	1	0.89
49208--49361	15	9.7	15	69	18	89	77	0	20	1	0.89
49205--49306	17	5.9	17	76	10	73	76	0	21	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48906--49365	47	10.0	46	66	17	172	75	0	22	0	0.90
49208--49312	26	4.1	26	73	10	65	77	0	20	0	0.89
49279--49417	17	7.8	17	67	16	66	72	0	25	0	0.94
49393--49444	27	2.0	27	88	3	79	75	1	23	0	0.91
49332--49445	20	5.7	19	68	19	72	71	1	26	0	0.95
49229--49454	17	11.1	20	67	24	61	73	1	25	0	0.95
49392--49469	22	3.5	22	75	14	70	73	1	25	0	0.91
49478--49520	17	2.6	16	85	10	59	53	0	46	0	1.00
49514--49547	16	2.1	16	89	10	52	79	0	17	2	0.86
49511--49706	41	4.7	43	66	16	110	64	1	32	2	1.11
49704--49749	23	2.0	23	83	8	58	67	0	32	0	0.91
49711--49810	35	2.9	34	72	15	89	61	0	38	1	1.03
49855--50097	64	3.9	63	78	8	207	74	0	23	2	0.94
50009--50505	8	60.9	8	67	20	84	73	0	24	0	0.94
49979--50243	72	3.7	70	76	17	247	76	0	21	0	0.85
49955--50205	53	4.8	52	74	15	157	76	0	21	1	0.91
50009--50350	61	5.4	62	71	19	198	75	1	22	0	0.92
49956--50372	162	2.6	157	76	11	355	74	0	23	1	0.95
50071--50289	72	3.1	68	78	13	210	77	1	20	0	0.90
50011--50341	111	2.9	116	77	13	305	75	1	22	0	0.92
50258--50371	57	1.9	59	84	11	155	73	1	24	0	0.92
50320--50383	19	3.2	20	78	8	69	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50363--50397	14	2.3	16	85	14	56	57	0	42	0	0.99
50315--50383	23	3.1	23	80	14	65	71	0	28	0	0.87
50365--50397	15	2.3	15	94	5	59	57	0	42	0	0.98
50392--50509	25	4.8	25	74	17	106	73	0	25	0	0.88
50285--50465	94	1.9	97	81	12	223	69	0	29	0	0.97
50439--50482	15	2.8	16	82	6	54	70	0	29	0	0.88
50394--50511	33	3.5	35	75	10	95	74	0	24	0	0.87
50406--50509	14	7.6	13	73	20	63	76	0	23	0	0.78
50461--50618	63	2.5	62	77	13	148	68	1	29	0	1.00
50517--50604	35	2.4	36	77	3	88	67	2	30	0	1.03
50386--50614	64	3.7	61	73	16	161	68	1	30	0	1.01
50613--50673	21	2.9	21	80	4	70	62	0	36	1	1.05
50655--50844	13	13.6	14	69	22	98	75	0	23	0	0.87
50655--50844	27	6.8	28	68	19	96	75	0	23	0	0.87
50662--50851	56	3.5	55	70	20	146	76	0	22	0	0.86
50779--50828	11	4.9	10	79	16	50	86	0	14	0	0.58
50783--50851	25	2.8	25	82	2	77	82	1	14	1	0.81
50664--50912	106	2.3	113	78	14	270	72	0	26	0	0.93
50875--50986	46	2.5	44	74	14	111	66	0	33	0	0.92
50915--51032	22	5.6	22	68	25	69	66	0	33	0	0.92
50931--51015	37	2.3	37	80	10	93	68	0	31	0	0.90
50913--50983	22	3.0	25	74	14	78	61	0	38	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50966--50997	16	2.0	16	93	0	55	78	0	21	0	0.76
50957--51035	39	2.0	41	88	11	121	68	0	31	0	0.90
50919--51078	58	2.7	62	78	7	170	70	0	29	0	0.93
51007--51049	15	2.9	14	83	10	59	74	0	25	0	0.82
51001--51054	11	5.2	11	75	8	51	75	0	24	0	0.80
51071--51133	28	2.3	28	73	13	51	74	0	25	0	0.82
51067--51131	25	2.6	25	87	2	94	75	0	24	0	0.81
51071--51128	21	2.6	22	84	13	75	72	0	27	0	0.85
51064--51138	25	2.8	28	78	14	84	74	1	24	0	0.89
50982--51147	90	1.8	90	80	10	196	69	1	28	0	0.98
51183--51362	51	3.4	49	73	20	125	65	0	33	0	1.02
51275--51317	14	3.0	14	86	10	52	67	0	32	0	0.91
51276--51318	15	3.0	14	86	13	61	69	0	30	0	0.88
51368--51480	9	12.6	9	71	17	65	79	0	20	0	0.73
51310--51426	42	2.8	42	81	12	127	70	0	29	0	0.94
51375--51491	10	10.7	10	72	23	78	82	0	17	0	0.68
51341--51489	45	3.3	45	73	18	114	78	0	20	0	0.79
51341--51492	54	3.1	49	75	15	145	78	0	20	0	0.78
51439--51492	1	54.0	1	84	0	63	90	0	9	0	0.45
51439--51501	25	2.5	25	87	7	83	85	1	12	0	0.66
51526--51570	14	3.1	15	84	12	58	80	0	20	0	0.72
51464--51609	67	2.2	64	81	11	170	69	0	29	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51581--51632	24	2.2	24	82	3	61	67	0	32	0	0.91
51584--51626	23	1.9	22	85	4	59	67	0	32	0	0.91

Tables:   1   2

The End!