genome.fa.s33.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3792
Parameters: 2 7 7 80 10 50 1000
Length:  85286

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6430--6606	27	6.6	27	81	6	180	27	15	28	28	1.96
6431--6585	82	1.9	80	85	5	213	27	16	28	28	1.97
6430--6606	55	3.3	53	82	6	178	27	15	28	28	1.96
6427--6606	82	2.2	80	81	3	209	27	16	27	28	1.97
8782--8954	38	4.6	39	76	17	170	26	26	23	23	2.00
8783--8954	80	2.3	72	80	14	195	26	26	23	23	2.00
16859--17083	40	5.6	39	87	6	290	26	27	23	22	2.00
16859--17083	83	2.8	82	89	4	343	26	27	23	22	2.00
16859--17079	123	1.8	122	89	1	352	26	27	23	22	1.99
22457--22627	93	1.8	93	92	0	288	28	28	21	22	1.99
22452--22620	46	3.7	46	77	13	193	29	27	20	22	1.98
23047--23106	30	2.0	30	90	0	93	30	25	8	36	1.85
27846--28011	56	3.0	55	85	7	185	31	22	16	28	1.96
29866--30089	40	5.6	39	85	5	247	25	26	22	25	2.00
29866--30089	79	2.8	78	82	11	258	25	26	22	25	2.00
29866--30089	118	1.9	120	82	7	287	25	26	22	25	2.00
34312--34402	19	4.9	18	72	15	60	50	13	17	18	1.78
34312--34402	6	14.8	6	73	13	69	50	13	17	18	1.78
34324--34402	31	2.5	31	87	0	113	49	13	17	18	1.80
34934--35106	27	6.4	26	82	10	145	25	19	18	36	1.94
34918--35103	54	3.5	52	81	8	203	26	19	17	36	1.94
34921--35194	81	3.3	80	82	8	255	24	20	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34957--35198	27	8.7	27	81	11	247	23	19	18	38	1.93
35071--35148	35	2.2	35	88	0	120	17	15	21	44	1.86
35044--35167	62	2.0	62	90	0	194	20	17	20	41	1.91
35017--35203	89	2.1	89	89	1	284	22	18	18	40	1.92
35186--35283	27	3.6	27	85	0	142	29	9	21	39	1.84
35183--35290	54	2.0	54	92	0	180	31	10	21	37	1.87
37240--37309	25	2.8	25	91	0	113	47	12	21	18	1.82
37456--37515	27	2.3	26	85	2	75	35	20	23	21	1.96
37484--37620	67	2.0	67	84	5	175	29	21	28	20	1.98
37915--38112	27	6.8	27	82	11	107	22	19	18	39	1.93
37957--38067	35	3.2	35	90	2	170	19	16	19	44	1.87
37882--38122	124	2.0	122	84	3	313	22	18	17	41	1.91
38026--38112	27	3.3	26	87	7	113	21	20	19	37	1.94
38104--38201	27	3.7	26	81	8	117	31	8	18	41	1.80
42914--43086	27	6.4	27	82	0	195	39	19	18	21	1.92
42916--43086	81	2.1	80	85	3	227	40	19	17	22	1.91
43076--43161	27	3.2	27	86	0	118	27	16	19	36	1.93
51936--51990	21	2.5	22	88	2	76	18	29	36	16	1.92
54893--55032	48	2.9	48	80	0	154	23	16	31	28	1.96
57034--57113	39	2.0	40	85	4	110	13	12	30	43	1.81
58914--59013	21	4.8	21	78	2	94	17	27	16	40	1.90
67127--67389	40	6.6	40	88	3	325	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67166--67424	80	3.3	80	85	3	256	25	20	27	25	1.99
75060--75358	77	3.8	77	86	5	354	24	20	28	26	1.99
75060--75358	40	7.6	40	86	5	360	24	20	28	26	1.99
80277--80401	40	3.2	40	78	18	145	21	24	27	27	1.99
82701--83389	47	14.7	48	86	9	933	34	6	28	30	1.83
83533--83626	34	2.6	37	83	6	122	25	23	26	24	2.00
83533--83634	37	2.9	36	82	7	127	24	22	29	23	1.99

Tables:   1

The End!