Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3611
Parameters: 2 7 7 80 10 50 1000
Length:  121245

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2245--2467
40
5.6
40
93
0
374
22
28
21
27
1.99
9257--9312
28
2.2
26
84
12
71
25
26
35
12
1.91
10673--10895
40
5.6
40
93
0
374
22
28
21
27
1.99
19078--19260
40
4.6
40
93
0
303
21
28
22
26
1.99
37546--37586
18
2.3
18
95
0
73
36
12
2
48
1.54
41456--41494
20
1.9
21
89
5
62
35
0
10
53
1.35
47667--47692
11
2.4
11
100
0
52
34
0
0
65
0.93
52362--52396
6
5.8
6
96
0
52
34
8
57
0
1.29
54415--56114
143
12.0
141
76
7
1401
39
15
8
36
1.79
54066--56042
284
6.9
285
77
9
1125
39
14
8
36
1.77
54125--56114
427
4.7
423
81
5
1754
39
15
8
36
1.78
55802--56058
132
1.9
133
84
2
347
37
14
8
38
1.77
58044--58344
47
6.3
47
90
1
431
31
8
30
29
1.87
58463--58541
37
2.1
37
85
0
104
25
17
30
26
1.97
62029--63810
285
6.3
283
77
6
1667
39
15
8
36
1.78
62029--63794
428
4.2
424
79
5
1819
39
15
8
36
1.78
62029--63810
143
12.6
141
79
5
1622
39
15
8
36
1.78
65849--65889
19
2.2
19
86
4
57
70
4
2
21
1.18
72661--72739
14
5.4
14
69
11
50
44
24
2
29
1.67
72652--72733
21
3.7
21
70
12
74
42
26
2
28
1.68
72636--72729
46
2.0
46
95
0
170
41
24
3
30
1.71
72902--73063
41
3.9
41
89
2
227
20
24
22
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73715--80779
143
49.8
141
78
7
6277
39
14
8
36
1.78
73715--80779
284
24.9
282
78
7
6149
39
14
8
36
1.78
74815--74845
10
3.1
10
95
0
53
70
6
0
22
1.09
85200--85291
40
2.4
39
83
3
114
34
38
14
13
1.84
87703--87785
6
14.5
6
75
5
57
77
3
7
12
1.10
92956--93176
49
4.6
49
75
11
190
24
29
17
27
1.97
92951--93175
92
2.3
98
81
5
264
24
29
17
27
1.98
92951--93224
94
2.9
94
75
10
254
24
29
18
27
1.98
93549--93605
30
1.9
30
88
0
87
22
24
14
38
1.91
93927--93951
12
2.1
12
100
0
50
60
16
8
16
1.58
100543--100670
50
2.6
50
81
7
147
23
26
21
28
1.99
100641--100766
44
2.7
46
81
9
150
26
28
18
26
1.98
100541--100814
48
5.8
48
72
16
171
24
27
20
27
1.99
100685--100814
47
2.8
44
82
13
147
23
29
20
27
1.98
101508--101532
12
2.1
12
100
0
50
60
16
8
16
1.58
106964--107065
52
2.0
52
92
3
170
25
14
9
50
1.74
115367--115592
40
5.7
40
86
4
253
26
21
26
25
2.00
115367--115592
120
1.9
120
82
9
291
26
21
26
25
2.00
115420--115615
80
2.5
79
82
10
195
28
19
26
25
1.99
119238--119283
22
2.1
22
100
0
92
23
17
26
32
1.97

Tables:   1

The End!