genome.fa.s372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2796
Parameters: 2 7 7 80 10 50 1000
Length:  63677

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100--283	40	4.7	38	76	10	165	25	22	26	25	2.00
1209--1405	51	3.7	51	72	18	136	65	0	0	33	0.96
1269--1542	20	13.1	20	68	20	95	68	0	1	29	0.96
1202--1349	65	2.3	66	81	13	161	65	0	0	33	0.98
1237--8688	35	216.5	34	64	22	748	65	0	0	34	1.00
1269--1601	132	2.5	131	79	14	309	68	0	1	30	0.98
1205--8686	81	91.6	83	63	25	537	64	0	0	34	1.00
1691--1728	14	2.7	14	84	8	51	68	0	0	31	0.90
1604--1736	49	2.7	50	75	16	138	58	0	0	40	1.03
1737--1778	22	1.9	22	85	0	57	50	2	0	47	1.14
1772--2941	26	42.4	27	64	25	78	66	0	0	32	0.98
1798--8687	38	181.1	38	64	24	440	65	0	0	34	1.00
1801--8687	51	133.4	52	63	24	420	65	0	0	34	1.00
1768--6292	34	128.1	35	64	23	293	65	0	0	33	0.99
1867--3147	58	21.8	58	66	21	200	66	0	0	33	1.00
1795--1954	13	12.3	12	69	19	56	69	0	0	30	0.89
1821--1947	4	32.2	4	69	16	61	68	0	0	31	0.90
1798--8464	20	325.9	20	63	24	221	65	0	0	34	1.00
2017--2168	19	7.8	19	68	23	66	71	0	1	26	0.99
2054--2083	15	2.0	15	100	0	60	73	0	0	26	0.84
2053--2268	23	8.8	24	66	20	58	68	0	0	30	0.96
2121--2496	28	12.8	30	64	20	109	67	0	0	32	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2542--2591	22	2.3	23	82	6	59	70	0	0	30	0.88
2147--2586	15	29.9	15	66	27	95	65	0	0	33	0.96
2342--2644	31	9.5	31	67	22	100	66	0	0	33	0.92
2687--2924	45	5.2	42	73	20	151	70	0	0	29	0.91
3054--3120	22	3.0	23	80	4	75	70	0	0	29	0.88
2997--3178	77	2.3	79	76	14	182	64	0	0	35	0.98
3143--3179	5	7.6	5	85	14	51	64	0	0	35	0.94
3190--3374	30	6.5	28	70	19	105	69	0	0	30	0.89
3316--3369	26	2.1	26	86	6	74	81	0	0	18	0.69
3236--3513	54	5.0	55	68	18	150	67	0	0	31	0.93
3426--5970	53	46.3	56	64	22	326	65	0	0	33	0.99
3329--3621	127	2.3	126	78	9	319	66	0	0	32	0.96
3474--3778	87	3.3	92	72	17	224	63	0	0	36	1.00
3635--3786	62	2.5	61	77	10	161	61	0	0	37	1.01
3953--5600	21	74.8	22	64	23	110	66	0	0	33	0.98
3114--7862	72	68.8	69	63	24	191	64	0	0	34	1.00
4872--5136	28	9.6	26	69	23	86	63	0	0	36	0.98
5034--5624	137	4.3	136	72	18	370	68	0	0	30	0.96
5084--5316	125	1.9	123	79	10	262	72	0	0	27	0.92
5498--5832	180	1.9	181	80	13	395	65	0	0	33	1.02
5694--5947	56	4.6	55	74	17	172	67	0	0	31	0.94
5854--6500	83	8.1	80	66	23	189	63	0	0	36	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6044--6161	9	12.8	9	66	16	55	67	0	0	31	0.96
6233--6337	31	3.4	31	79	8	99	60	0	0	40	0.97
6374--6430	23	2.5	23	78	15	57	57	3	0	38	1.16
6613--6948	89	3.7	87	70	18	235	65	0	1	33	1.03
6642--8657	68	29.7	69	64	23	219	64	0	0	35	0.99
6644--7040	108	3.7	107	74	15	301	67	0	0	31	0.99
6964--7115	56	2.7	56	79	10	150	64	0	0	34	0.99
1237--8687	16	459.4	16	63	22	486	64	0	0	34	1.00
7132--8121	146	6.7	143	68	23	377	63	0	0	35	0.99
7467--8398	84	10.7	84	65	23	213	63	0	0	36	0.97
7953--8349	113	3.5	109	75	14	320	61	0	0	38	0.98
7717--8172	89	5.2	87	67	23	216	61	0	0	37	0.98
8105--8244	27	5.3	25	70	21	81	56	0	0	43	0.99
8270--8472	23	9.1	23	70	23	109	70	0	0	29	0.88
8207--8487	107	2.6	108	74	16	242	67	0	0	31	0.93
8545--8675	33	3.9	34	70	15	76	70	0	0	28	0.98
11751--11795	19	2.4	19	92	3	74	62	6	13	17	1.52
13117--13157	19	2.2	19	100	0	82	24	24	29	21	1.99
20138--20163	12	2.2	12	100	0	52	30	26	7	34	1.85
22239--22284	23	2.0	23	95	0	83	41	13	2	43	1.55
23006--23048	22	2.0	22	85	0	59	25	27	37	9	1.87
23130--23174	14	3.5	14	77	22	62	37	4	13	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23131--23179	24	2.0	24	96	0	89	40	4	10	44	1.57
26701--26751	18	2.9	17	71	5	57	27	0	35	37	1.57
27997--28076	38	2.2	36	86	8	108	45	25	2	27	1.66
28214--28312	7	13.7	7	71	5	54	23	0	29	47	1.52
28634--28749	40	2.9	41	85	5	146	26	19	17	36	1.94
28654--28760	41	2.7	40	88	1	142	26	20	17	35	1.95
29696--29768	20	3.6	20	77	1	74	23	6	13	56	1.61
32143--32208	15	4.4	15	75	7	53	31	13	4	50	1.62
32702--32744	20	2.0	22	82	8	54	25	25	0	48	1.51
32728--32770	23	1.9	23	86	13	63	23	16	6	53	1.67
32784--32821	19	2.0	19	89	0	58	26	0	7	65	1.19
33911--33942	7	4.6	7	96	0	55	28	0	3	68	1.04
34561--34602	18	2.3	18	87	0	57	19	28	7	45	1.76
37565--37998	126	3.5	125	92	0	724	27	18	16	37	1.93
38121--38152	16	2.0	16	93	0	55	53	28	0	18	1.45
38019--38961	158	6.1	158	76	12	775	43	20	1	33	1.63
38301--38753	142	3.1	142	86	7	536	43	20	2	33	1.64
38431--38502	24	3.0	24	76	13	85	51	29	0	19	1.47
39253--39323	23	3.0	23	73	19	74	50	29	0	19	1.48
38599--39893	664	1.9	665	97	0	2434	43	20	7	28	1.79
39260--39625	158	2.3	157	91	2	574	45	20	1	31	1.60
46296--46387	46	2.0	46	95	0	166	40	7	11	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50912--51135	40	5.7	40	85	7	264	25	22	27	24	2.00
50965--51135	78	2.2	78	87	6	238	25	22	28	24	2.00
50965--51168	79	2.6	79	83	5	218	26	21	27	24	1.99
55482--55704	40	5.7	39	84	8	258	24	22	27	24	2.00
63433--63601	39	4.3	39	88	5	218	24	21	28	24	1.99
63433--63601	79	2.2	77	85	6	216	24	21	28	24	1.99

Tables:   1

The End!