Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1316
Parameters: 2 7 7 80 10 50 1000
Length:  40060

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1369--1402
1
34.0
1
93
0
50
94
5
0
0
0.32
1371--1406
11
3.3
11
88
0
54
91
8
0
0
0.41
1364--1406
10
4.4
10
85
8
54
88
9
2
0
0.60
9776--9823
14
3.4
14
88
0
69
18
29
6
45
1.74
11460--11527
21
3.2
20
82
12
75
77
2
17
1
0.96
11471--11527
5
11.0
5
77
17
55
78
1
17
1
0.91
11475--11523
27
1.9
25
84
12
64
79
2
16
2
0.92
12116--12161
24
1.9
24
100
0
92
26
21
26
26
2.00
13652--13681
12
2.5
12
94
0
51
80
3
6
10
1.01
13652--13691
11
3.5
11
86
3
53
80
2
5
12
0.98
14807--14860
20
2.7
20
82
0
63
24
20
18
37
1.94
14807--14880
30
2.5
30
86
8
98
21
20
18
39
1.93
14807--14871
20
3.2
20
71
16
53
23
21
16
38
1.93
17587--17628
17
2.4
18
80
7
52
57
4
23
14
1.56
20404--20451
24
2.0
24
100
0
96
29
20
25
25
1.99
23547--23645
30
3.3
29
73
9
92
28
29
16
26
1.97
25354--25438
30
2.8
30
70
0
80
27
16
27
29
1.97
26428--26524
30
3.2
30
75
2
106
27
26
16
28
1.97
28219--28258
10
4.0
10
83
0
53
85
5
0
10
0.75
28219--28257
9
3.9
10
83
12
53
87
2
0
10
0.65
28219--28275
20
2.7
20
86
8
69
84
3
3
8
0.86
29154--29224
37
1.9
37
86
11
101
76
2
18
2
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29164--29213
6
8.2
6
83
14
50
76
2
20
2
0.99
31436--31532
30
3.2
30
75
2
106
27
26
16
28
1.97
35301--35397
30
3.2
30
71
8
90
27
15
28
27
1.96
38264--38288
13
1.9
13
100
0
50
64
8
0
28
1.22
38510--38549
21
1.9
21
94
0
71
40
17
22
20
1.92
39986--40030
14
3.3
14
78
6
56
48
15
0
35
1.45

Tables:   1

The End!