genome.fa.s512.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold444
Parameters: 2 7 7 80 10 50 1000
Length:  51047

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229--282	20	2.8	19	79	17	51	9	5	5	79	1.04
402--525	11	10.8	11	73	17	85	3	6	5	84	0.85
402--525	34	3.7	32	77	9	115	3	6	5	84	0.85
402--525	1	124.0	1	73	0	77	3	6	5	84	0.85
471--537	30	2.2	31	83	2	82	7	4	2	85	0.83
4452--4634	40	4.7	40	80	8	198	25	26	22	25	2.00
4452--4634	79	2.3	80	78	9	189	25	26	22	25	2.00
6729--6853	61	2.0	61	98	0	241	43	5	16	34	1.72
7127--7260	45	3.0	45	95	0	232	23	21	27	27	1.99
16171--16293	55	2.2	56	88	2	176	26	12	28	33	1.92
16171--16293	28	4.4	28	90	2	176	26	12	28	33	1.92
16196--16306	28	4.0	27	90	3	116	28	11	26	33	1.91
18759--18850	27	3.4	27	80	7	105	16	22	22	38	1.93
26583--26692	27	4.1	26	81	9	123	16	23	22	37	1.94
36518--36570	24	2.2	24	93	0	88	32	3	45	18	1.68
36640--40066	23	149.8	23	73	10	2051	36	23	7	32	1.82
36643--39942	229	14.4	229	92	1	4935	36	23	7	32	1.82
36643--40066	458	7.6	457	94	1	5546	36	23	7	32	1.82
37102--39928	206	13.7	204	74	9	1028	36	23	7	32	1.82
38706--40066	435	3.1	435	95	2	2299	37	23	7	31	1.82
45033--45144	24	4.6	24	76	13	88	34	22	8	33	1.85
45036--50980	23	263.7	23	68	16	2080	36	23	7	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080--51002	45	132.5	46	69	15	2541	36	23	7	32	1.82
45666--45823	70	2.3	69	81	8	189	35	22	8	34	1.84
45893--46044	66	2.3	66	78	17	179	36	21	7	34	1.82
46331--46481	68	2.3	65	83	10	182	33	23	7	34	1.84
47269--47782	202	2.5	202	79	10	516	36	23	7	32	1.82
47909--47950	21	2.0	22	85	4	59	33	23	7	35	1.82
47881--48025	59	2.3	62	79	17	156	35	21	8	35	1.83
47881--49428	734	2.1	725	85	10	2097	36	23	6	33	1.82
49972--50772	66	12.0	70	71	14	299	36	24	6	32	1.82
50866--50918	21	2.5	22	81	9	65	37	24	3	33	1.74

Tables:   1

The End!