genome.fa.s548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2677
Parameters: 2 7 7 80 10 50 1000
Length:  86877

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6631--6694	30	2.2	29	85	2	83	35	6	26	31	1.81
15282--15369	34	2.6	34	81	0	95	26	25	23	25	2.00
18415--18573	43	3.7	43	75	9	146	33	24	15	26	1.95
18448--18561	42	2.6	43	79	9	133	38	24	12	24	1.90
23465--23565	27	3.7	26	79	11	105	36	21	22	18	1.95
23465--23575	54	2.1	54	83	6	136	36	23	22	18	1.95
27328--27411	27	3.2	26	85	8	98	33	23	25	17	1.97
27517--27579	26	2.3	26	83	5	72	28	11	26	33	1.91
35133--35244	27	4.2	26	82	10	127	36	22	24	16	1.94
35133--35244	54	2.1	54	86	3	154	36	22	24	16	1.94
38949--39147	51	3.9	51	92	1	319	29	26	13	30	1.94
39171--39293	52	2.4	52	87	8	187	25	24	13	36	1.92
39171--39293	24	4.7	27	79	19	143	25	24	13	36	1.92
46331--46406	27	2.8	26	90	4	116	25	19	19	35	1.95
55146--55217	22	3.1	22	67	29	60	37	8	12	41	1.73
58585--58647	31	2.0	31	93	0	108	42	4	14	38	1.66
59625--59691	18	3.8	17	78	7	71	38	11	19	29	1.88
60162--60196	17	2.1	16	89	5	52	34	22	0	42	1.54
67001--67227	45	5.1	45	89	1	316	24	19	29	26	1.99
70249--70471	40	5.6	39	83	5	232	24	20	28	26	1.99
70324--70506	79	2.3	80	81	1	217	25	20	28	25	1.99
72247--72345	37	2.7	37	95	0	171	25	30	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72486--73265	48	16.0	48	93	2	1281	31	26	6	35	1.81
72486--73265	98	8.0	96	94	1	1281	31	26	6	35	1.81
80279--80504	45	5.1	45	88	2	307	23	20	29	26	1.99
82388--82484	35	2.7	36	90	6	151	25	29	19	24	1.98
82620--83812	48	25.0	48	90	6	1822	31	26	6	35	1.81
82874--82946	22	3.2	22	66	27	62	26	30	9	34	1.88
82620--83812	143	8.3	144	90	6	1822	31	26	6	35	1.81
82629--83812	382	3.1	383	91	5	1860	31	26	6	35	1.81

Tables:   1

The End!