genome.fa.s606.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2215
Parameters: 2 7 7 80 10 50 1000
Length:  35294

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--404	47	8.5	47	93	2	657	32	8	30	27	1.86
1--404	96	4.2	94	92	3	657	32	8	30	27	1.86
143--221	25	3.3	25	63	22	69	31	5	31	31	1.79
1--404	143	2.8	143	95	1	693	32	8	30	27	1.86
1477--1766	40	7.3	40	93	1	458	19	22	30	27	1.98
1776--1879	28	3.7	28	74	7	102	22	23	27	26	1.99
4887--5291	47	8.5	47	93	2	659	33	8	30	27	1.86
4887--5291	96	4.2	94	92	3	659	33	8	30	27	1.86
5030--5108	25	3.3	25	63	22	69	31	5	31	31	1.79
4887--5271	143	2.7	143	95	0	680	33	8	30	27	1.87
6370--6659	40	7.3	40	93	1	458	19	22	30	27	1.98
6669--6772	28	3.7	28	74	7	102	22	23	27	26	1.99
9782--10189	47	8.5	49	91	5	640	32	8	31	27	1.86
9782--10189	96	4.2	98	90	6	640	32	8	31	27	1.86
14331--14409	25	3.3	25	63	22	69	31	5	31	31	1.79
14144--14594	47	9.5	47	89	5	676	33	8	30	27	1.87
16165--16517	40	8.9	40	92	3	545	20	22	30	27	1.98
16165--16517	79	4.4	80	91	4	547	20	22	30	27	1.98
16169--16517	119	2.9	120	90	3	553	19	22	30	27	1.98
19643--20047	47	8.5	47	93	2	659	33	8	30	27	1.86
19643--20047	96	4.2	94	92	3	659	33	8	30	27	1.86
19786--19864	25	3.3	25	63	22	69	31	5	31	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19643--20027	143	2.7	143	95	0	680	33	8	30	27	1.87
21126--21415	40	7.3	40	93	1	458	19	22	30	27	1.98
21425--21528	28	3.7	28	74	7	102	22	23	27	26	1.99
24539--24943	47	8.5	47	93	2	659	33	8	30	27	1.86
24539--24943	96	4.2	94	92	3	659	33	8	30	27	1.86
24682--24760	25	3.3	25	63	22	69	31	5	31	31	1.79
24539--24923	143	2.7	143	95	0	680	33	8	30	27	1.87
26022--26311	40	7.3	40	93	1	458	19	22	30	27	1.98
26321--26424	28	3.7	28	74	7	102	22	23	27	26	1.99
29432--29834	47	8.5	47	93	3	659	33	8	31	27	1.86
29573--29651	25	3.3	25	63	22	69	31	5	31	31	1.79
30912--31201	40	7.3	40	93	1	458	19	22	30	27	1.98
31211--31314	28	3.7	28	74	7	102	22	23	27	26	1.99
34179--34578	46	8.5	45	75	18	320	32	6	31	29	1.83
34178--34490	153	2.0	152	86	10	444	32	6	30	30	1.82
34333--34578	135	1.8	132	84	10	340	32	6	30	29	1.84

Tables:   1

The End!