Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1251
Parameters: 2 7 7 80 10 50 1000
Length:  96910

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3198--3414
40
5.5
40
80
10
200
23
20
27
28
1.99
3198--3417
77
2.8
80
80
10
215
23
20
27
28
1.99
7965--7998
17
2.1
16
94
5
59
50
14
17
17
1.79
10719--10860
40
3.6
39
78
10
137
23
20
27
28
1.99
10801--10924
63
2.0
64
87
4
180
24
21
29
25
1.99
10864--10972
40
2.7
39
83
5
121
26
21
28
23
1.99
10772--10962
103
1.9
103
81
6
235
25
20
27
26
1.99
24853--25039
94
2.0
94
86
4
261
34
11
28
25
1.90
24853--24999
47
3.1
47
97
0
267
36
10
27
25
1.89
25023--25149
46
2.8
46
88
0
191
34
8
32
24
1.86
26637--26997
40
8.9
40
89
4
519
24
21
27
26
1.99
27199--27235
16
2.3
16
100
0
74
51
5
16
27
1.66
33319--33405
44
2.0
44
88
8
133
33
17
16
33
1.92
40313--40381
32
2.2
32
100
0
138
31
8
24
34
1.86
42916--42949
17
1.9
18
88
5
52
38
5
5
50
1.51
45729--45862
67
2.0
67
97
0
250
29
16
17
35
1.92
47293--47352
27
2.3
26
85
2
75
35
20
23
21
1.96
47314--47377
33
2.0
32
84
3
83
35
20
23
20
1.96
48043--48096
27
2.0
27
85
3
74
35
20
22
22
1.96
48099--48161
27
2.3
27
86
0
81
30
23
12
33
1.92
55939--55987
23
2.1
23
96
0
89
34
12
6
46
1.66
59998--60118
47
2.6
45
82
11
138
28
18
30
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60197--60363
49
3.4
49
79
8
166
26
17
29
25
1.98
60198--60374
96
1.8
98
86
6
261
26
18
28
25
1.98
62754--62970
49
4.4
49
87
2
290
28
28
17
25
1.98
62754--62980
99
2.3
100
85
2
296
28
28
18
24
1.98
66772--67111
46
7.6
46
78
10
330
18
22
15
42
1.89
66772--66946
47
3.7
47
86
0
235
18
24
15
41
1.89
66914--66970
16
3.4
16
70
25
55
21
24
17
36
1.94
66911--66980
34
2.1
34
97
0
131
20
22
15
41
1.90
66864--67020
79
2.0
81
89
2
246
19
22
15
42
1.88
69228--69275
11
4.2
11
79
10
60
64
0
0
35
0.94
69222--69277
24
2.3
24
87
3
76
60
1
0
37
1.07
74220--74254
16
2.1
17
89
5
54
34
42
5
17
1.73
82848--82962
29
4.0
28
80
2
113
26
14
27
30
1.95
86560--86606
19
2.4
19
82
10
51
17
25
2
55
1.53
88172--88198
14
1.9
14
100
0
54
77
0
22
0
0.76
88172--88304
58
2.3
57
90
3
205
54
9
21
15
1.67
89441--89617
40
4.5
41
82
9
206
21
24
28
25
1.99
96129--96261
53
2.5
51
82
14
155
54
8
21
16
1.68

Tables:   1

The End!