genome.fa.s679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2239
Parameters: 2 7 7 80 10 50 1000
Length:  64733

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3597--3637	20	2.0	22	85	9	59	48	7	14	29	1.71
10390--10529	56	2.5	56	90	1	199	33	25	12	27	1.93
10925--10960	12	3.2	12	92	7	58	41	0	0	58	0.98
10925--10967	21	2.1	22	83	12	56	39	2	0	58	1.11
10930--10975	21	2.2	21	84	7	58	39	4	0	56	1.19
12061--12121	30	2.0	30	83	0	77	42	3	24	29	1.70
12619--12899	64	4.3	64	79	6	235	32	16	28	22	1.95
12654--12899	64	3.8	63	80	5	269	31	15	29	23	1.95
16682--17075	131	3.0	131	90	1	592	27	19	18	34	1.95
17575--17693	30	4.0	30	95	0	211	26	48	3	21	1.65
17575--17739	30	5.5	30	88	1	208	26	47	3	22	1.67
18228--18356	23	5.6	23	70	16	79	34	4	3	57	1.35
18234--18440	25	8.5	25	68	15	105	32	6	4	55	1.47
18588--18630	8	5.5	8	83	5	52	30	2	2	65	1.18
18588--18630	16	2.8	16	89	3	61	30	2	2	65	1.18
31777--32140	47	7.7	47	93	0	586	32	8	29	28	1.87
31824--31902	25	3.3	25	61	10	65	32	5	29	32	1.79
32259--32411	37	4.1	37	93	1	236	21	16	33	27	1.95
34932--34958	14	1.9	14	100	0	54	14	14	7	62	1.51
34793--35301	89	5.7	89	94	1	903	25	19	21	33	1.97
34793--35538	178	4.2	178	86	9	999	26	18	20	34	1.96
35200--35226	14	1.9	14	100	0	54	14	14	7	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35214--35373	75	2.1	75	97	0	311	26	19	21	31	1.97
35364--35411	15	3.3	15	82	5	53	16	12	6	64	1.46
34793--35538	357	2.1	345	86	9	1011	26	18	20	34	1.96
41086--41181	47	2.0	48	97	2	185	41	14	22	20	1.89
43738--44053	47	6.7	47	93	1	510	32	8	30	28	1.87
43784--43862	25	3.3	25	61	10	65	32	5	29	32	1.79
44172--44322	37	4.1	37	93	2	252	21	17	33	26	1.96
46185--46287	43	2.4	43	100	0	206	22	15	35	26	1.94
46269--46342	29	2.6	29	89	4	105	25	16	32	25	1.96
46653--46835	40	4.6	40	83	5	201	24	22	27	25	2.00
50193--50509	47	6.7	47	92	0	492	33	8	29	28	1.87
50240--50318	25	3.3	25	61	10	65	32	5	29	32	1.79
50334--50412	25	3.3	25	61	10	65	35	3	27	32	1.75
50628--50741	37	3.1	37	92	2	178	22	17	33	26	1.96
53317--53343	14	1.9	14	100	0	54	14	14	7	62	1.51
53178--53686	89	5.7	89	94	1	903	25	19	21	33	1.97
53585--53611	14	1.9	14	100	0	54	14	14	7	62	1.51
53599--53758	75	2.1	75	97	0	311	26	19	21	31	1.97
53749--53796	15	3.3	15	82	5	53	16	12	6	64	1.46
53228--53923	267	2.6	265	83	12	895	26	18	20	34	1.95
62633--62947	47	6.7	47	93	2	510	32	8	30	28	1.88
62633--62947	140	2.2	140	92	2	490	32	8	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62633--62947	93	3.4	94	93	2	510	32	8	30	28	1.88
63066--63154	37	2.4	37	98	1	171	22	20	32	24	1.98

Tables:   1

The End!