Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1285
Parameters: 2 7 7 80 10 50 1000
Length:  49693

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
885--1058
40
4.3
40
86
4
217
25
20
27
27
1.99
1044--1074
16
1.9
16
93
0
53
16
25
29
29
1.96
964--1148
95
1.9
95
82
4
230
24
20
28
26
1.99
8775--9037
40
6.6
40
87
3
316
24
20
28
26
1.99
8814--9072
80
3.3
80
84
3
238
25
20
28
25
1.99
12114--12155
12
3.4
12
78
15
50
64
0
0
35
0.94
18142--18204
29
2.2
29
91
0
99
26
12
7
52
1.67
18350--18447
49
2.0
49
93
0
169
29
20
18
31
1.96
27098--27274
40
4.5
40
85
4
191
23
22
28
25
1.99
27098--27274
80
2.2
80
83
5
218
23
22
28
25
1.99
35295--35471
40
4.5
40
88
4
236
24
22
27
25
1.99
43571--43738
81
2.1
82
81
10
204
24
22
27
25
1.99
43567--43730
41
4.0
41
82
11
194
24
22
28
25
2.00
45865--45967
38
2.8
37
88
8
165
24
31
19
25
1.98
46106--46319
47
4.4
48
87
6
299
31
26
6
35
1.81
46122--46311
97
2.0
94
89
6
292
31
26
6
35
1.81
46132--46357
52
4.6
47
82
9
231
31
25
6
36
1.82

Tables:   1

The End!