Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3176
Parameters: 2 7 7 80 10 50 1000
Length:  112246

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1402--1453
22
2.4
22
90
3
79
71
1
19
7
1.20
1402--1459
10
5.5
10
78
10
53
70
1
20
6
1.19
18907--18946
22
2.0
22
85
14
59
60
22
2
15
1.47
19335--19395
23
2.6
23
81
5
59
14
8
3
73
1.19
19338--19382
13
3.5
13
84
0
54
13
6
2
77
1.05
24097--24143
20
2.3
20
81
0
58
23
12
34
29
1.92
25765--25797
15
2.1
16
88
5
50
9
33
0
57
1.30
28535--28581
20
2.3
20
81
0
58
23
12
34
29
1.92
30948--30978
14
2.2
14
94
0
53
80
3
0
16
0.83
30948--30981
13
2.5
13
90
4
50
82
2
0
14
0.79
31296--31338
15
2.8
16
79
10
54
6
13
4
74
1.19
32871--32917
20
2.3
20
81
0
58
23
12
34
29
1.92
35200--35240
17
2.4
18
80
8
50
14
24
4
56
1.58
37466--37522
12
5.0
11
84
14
62
15
8
3
71
1.24
37466--37512
24
2.0
24
87
8
69
17
10
2
70
1.26
40932--40957
13
2.0
13
100
0
52
46
7
0
46
1.31
41346--41384
20
1.9
21
89
5
62
35
12
28
23
1.91
46154--46218
21
3.0
21
86
4
85
35
32
3
29
1.73
55954--56005
18
3.0
17
74
20
54
71
5
1
21
1.17
68923--68971
14
3.6
13
89
8
71
75
2
6
16
1.09
68923--68971
15
3.5
14
91
8
82
75
2
6
16
1.09
86780--86853
11
6.7
11
73
6
60
75
2
9
12
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92362--92389
4
7.0
4
100
0
56
25
0
0
75
0.81
94985--95024
18
2.2
18
86
4
53
12
27
0
60
1.33
102875--102963
45
2.0
42
87
10
126
24
17
22
34
1.96
103270--103307
10
3.7
10
92
3
58
73
10
0
15
1.09
103270--103310
21
2.0
21
95
0
73
70
9
0
19
1.14
103270--103310
11
3.8
11
90
6
66
70
9
0
19
1.14
103349--103383
13
2.6
13
95
4
61
68
2
11
17
1.31
103348--103384
14
2.6
15
87
12
60
70
2
10
16
1.27

Tables:   1

The End!