genome.fa.s790.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Length:  689488

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533012--533063	27	1.9	27	88	7	79	40	15	23	21	1.91
534323--534415	46	2.0	46	95	4	170	24	19	21	34	1.96
540313--540390	33	2.4	34	80	10	90	11	26	5	56	1.55
540380--540440	6	10.7	6	85	7	74	11	18	0	70	1.16
540392--540434	21	2.0	22	86	4	61	11	18	0	69	1.17
540386--540441	27	2.0	28	89	3	87	12	17	0	69	1.18
543260--543310	10	5.1	10	77	17	61	27	15	29	27	1.96
543262--543310	20	2.5	20	89	0	80	26	16	30	26	1.97
551894--551924	15	2.1	15	93	0	53	83	0	16	0	0.64
557527--557553	14	1.9	14	100	0	54	22	22	11	44	1.84
562440--562479	20	2.0	21	95	5	73	35	15	25	25	1.94
564709--564763	12	4.4	12	78	17	51	3	21	1	72	1.09
564694--564758	26	2.5	26	80	14	80	4	21	3	70	1.19
568879--568979	52	1.9	52	92	4	168	25	18	21	33	1.97
575507--575605	52	1.9	52	93	0	171	27	19	22	31	1.98
580093--580168	10	7.6	10	77	11	75	28	15	27	27	1.96
580085--580169	20	4.3	20	89	1	118	29	17	27	25	1.98
580085--580176	40	2.3	40	88	1	132	30	16	28	25	1.96
580085--580176	10	9.3	10	73	10	64	30	16	28	25	1.96
580085--580181	20	4.9	19	85	6	113	30	15	27	25	1.96
583642--583683	17	2.4	18	88	4	59	14	28	2	54	1.52
585577--585621	22	2.0	23	82	4	56	40	28	4	26	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589718--589776	18	3.5	17	80	13	59	64	3	27	5	1.30
593278--593310	14	2.4	14	90	10	50	27	9	6	57	1.53
594481--594523	15	2.9	14	90	10	68	58	2	13	25	1.48
594486--594524	16	2.5	16	95	4	71	66	2	10	20	1.33
603738--603781	18	2.4	18	88	11	63	72	2	20	4	1.13
605534--605605	33	2.1	34	87	2	101	41	6	11	40	1.67
613087--613131	20	2.2	20	88	0	63	26	13	15	44	1.83
615231--615390	80	2.0	80	100	0	320	16	21	20	42	1.89
624186--624221	14	2.5	15	95	4	65	22	8	0	69	1.15
625453--625496	22	1.9	24	86	9	65	65	15	0	18	1.27
627206--627257	27	1.9	27	84	0	68	7	34	1	55	1.39
635440--635521	42	2.0	42	100	0	164	39	9	18	32	1.83
646180--646204	13	1.9	13	100	0	50	72	0	8	20	1.10
648421--648474	19	2.7	20	82	8	65	77	1	11	9	1.06
653206--653287	42	2.0	42	100	0	164	39	9	18	32	1.83
656918--657013	31	3.1	31	95	3	174	31	9	13	45	1.75
660896--660957	31	2.0	31	100	0	124	32	9	16	41	1.80
668625--668649	13	1.9	13	100	0	50	72	0	8	20	1.10
670865--670918	19	2.7	21	83	16	78	77	1	11	9	1.06
670857--670923	15	4.1	16	75	17	57	74	2	13	8	1.17
676628--676687	20	3.1	19	70	13	50	60	0	5	35	1.19
681034--681218	79	2.3	81	82	7	218	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681035--681218	40	4.6	40	80	10	198	24	23	27	24	2.00
681087--681251	79	2.1	79	82	6	192	26	21	27	24	2.00
688885--689061	38	4.6	38	78	10	143	23	23	27	24	2.00
688885--689059	39	4.6	38	77	7	153	24	24	27	24	2.00

Tables:   1   2

The End!