Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  424860

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
286238--286280
18
2.4
18
96
0
77
74
4
2
18
1.10
287214--287242
12
2.4
12
100
0
58
68
0
17
13
1.20
289039--289073
13
2.7
13
90
0
52
45
0
11
42
1.40
292816--292878
21
3.0
21
86
6
74
28
4
33
33
1.78
299496--299538
18
2.3
18
81
18
52
13
20
2
62
1.42
303094--303132
10
3.9
10
93
0
60
12
2
5
79
1.00
309593--309637
19
2.3
20
88
3
65
6
13
2
77
1.05
313038--313084
20
2.3
20
85
0
67
29
36
12
21
1.91
316183--316216
12
2.7
13
86
9
52
11
26
0
61
1.30
327280--327323
22
2.0
22
95
0
79
34
4
36
25
1.76
334183--334229
20
2.3
20
85
0
67
21
12
36
29
1.91
334343--334391
25
2.0
25
84
8
64
18
18
16
46
1.84
335418--335472
17
3.2
17
76
5
56
7
12
3
76
1.12
335423--335464
18
2.3
18
87
4
57
7
9
2
80
0.97
340094--340142
13
3.8
13
91
5
82
18
8
0
73
1.07
340098--340142
12
3.7
12
94
5
81
15
6
0
77
0.96
340441--340484
22
2.0
22
95
0
79
34
4
36
25
1.76
341893--341933
16
2.5
16
92
4
64
9
12
2
75
1.13
341892--341934
17
2.5
17
85
11
61
9
11
2
76
1.10
342277--342334
22
2.6
22
81
5
64
31
5
32
31
1.80
344477--344523
20
2.3
20
77
0
58
21
14
34
29
1.93
351947--351988
12
3.8
11
84
9
59
14
0
7
78
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351949--351988
10
3.8
10
86
6
53
12
0
7
80
0.91
351950--351995
21
2.1
22
88
4
67
17
2
6
73
1.14
351946--351978
12
2.8
12
100
0
66
18
0
6
75
1.00
355326--355388
21
3.0
21
88
2
81
33
31
4
30
1.78
355697--355756
17
3.8
17
78
17
56
71
5
8
15
1.27
355716--355750
13
2.6
13
95
4
61
80
0
8
11
0.92
355699--355756
30
1.9
30
85
0
80
74
3
8
13
1.19
357946--357999
17
3.2
17
81
0
63
75
3
12
7
1.14
360907--360945
20
1.9
21
89
5
62
23
28
12
35
1.91
361335--361360
13
2.0
13
100
0
52
46
0
7
46
1.31
362466--362506
11
3.6
11
83
3
55
80
7
0
12
0.90
362551--362623
30
2.4
29
88
8
112
75
2
10
10
1.15
363447--363545
6
16.0
6
71
10
65
71
3
20
5
1.18
363507--363544
13
2.8
13
82
17
51
73
0
18
7
1.06
363563--363602
18
2.3
18
82
4
55
65
5
20
10
1.42
363563--363612
17
2.9
17
77
8
57
62
4
24
10
1.44
363549--363644
36
2.8
34
79
14
92
56
4
26
13
1.55
363570--363644
16
4.6
16
72
26
52
56
2
29
12
1.49
364523--364574
22
2.4
21
87
3
68
32
1
32
32
1.69
366900--366925
13
2.0
13
100
0
52
46
0
7
46
1.31
369365--369427
21
3.0
21
88
2
81
33
31
4
30
1.78
372207--372236
10
2.9
10
95
5
51
80
6
3
10
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
373422--373529
6
17.7
6
69
10
67
72
3
17
6
1.21
373490--373527
13
2.8
13
82
17
51
73
0
18
7
1.06
373533--373564
12
2.7
12
95
0
55
59
0
21
18
1.38
376826--376871
17
2.8
17
90
3
76
71
0
15
13
1.14
376828--376867
16
2.5
16
95
0
71
77
0
12
10
0.99
379246--379419
85
2.0
85
96
0
321
28
17
12
41
1.86
381636--381703
28
2.4
28
85
4
84
73
1
13
11
1.17
382643--382670
4
7.0
4
100
0
56
75
0
0
25
0.81
383232--383275
22
2.0
22
95
0
79
34
4
36
25
1.76
387545--387586
19
2.2
19
91
0
66
7
11
2
78
1.04
390033--390076
22
2.0
22
95
0
79
34
4
36
25
1.76
392229--392277
10
4.9
10
76
0
53
26
28
16
28
1.97
392229--392275
20
2.3
20
92
0
76
25
29
17
27
1.97
395272--395316
21
2.3
18
85
11
54
55
0
26
17
1.42
399748--399841
46
2.0
46
93
4
163
35
22
18
24
1.96
409664--409710
20
2.3
20
85
0
67
21
12
36
29
1.91
412505--412546
12
3.3
12
84
12
57
2
11
0
85
0.68
412498--412568
22
3.1
22
82
11
81
4
15
1
78
0.97
412498--412568
23
3.1
23
84
8
90
4
15
1
78
0.97
412498--412556
11
5.2
11
76
8
55
3
15
1
79
0.94
412498--412567
11
6.4
11
69
12
54
4
15
1
78
0.98
412562--412588
10
2.7
10
100
0
54
14
0
7
77
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
412506--412593
22
4.0
22
80
12
90
7
10
4
77
1.12
412519--412579
32
1.9
32
86
6
88
6
13
4
75
1.16
412518--412588
32
2.2
31
80
11
81
8
11
4
76
1.15
414059--414105
20
2.3
20
85
0
67
21
12
36
29
1.91
421886--421930
23
1.9
23
86
13
65
68
0
22
8
1.16
423249--423282
17
2.0
17
88
11
52
35
14
26
23
1.94

Tables:   1   2

The End!