genome.fa.s819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1628
Parameters: 2 7 7 80 10 50 1000
Length:  134877

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068--1111	22	2.0	22	95	0	79	34	4	36	25	1.76
2659--2705	20	2.3	20	85	0	67	21	12	36	29	1.91
4375--4480	48	2.2	48	85	9	137	14	24	1	59	1.45
8081--8127	20	2.3	20	85	0	67	21	12	36	29	1.91
8818--8884	31	2.1	32	81	13	77	31	29	11	26	1.92
24910--24962	23	2.4	22	76	20	56	9	18	1	69	1.25
29671--29733	21	3.0	21	83	2	81	33	3	30	33	1.74
30812--30853	10	4.3	10	78	6	50	28	11	23	35	1.91
31483--31521	20	1.9	21	89	5	62	23	28	12	35	1.91
31911--31936	13	2.0	13	100	0	52	46	0	7	46	1.31
34020--34054	15	2.2	17	90	10	56	74	0	17	8	1.06
34062--34138	24	3.2	24	66	0	64	59	0	23	16	1.37
34052--34149	48	2.0	48	90	0	151	57	0	24	18	1.41
34551--34580	16	1.9	15	93	6	51	20	3	33	43	1.68
38658--38698	9	4.4	9	87	3	55	9	7	9	73	1.26
43730--43773	22	2.0	22	95	0	79	34	4	36	25	1.76
47406--47449	22	2.0	22	95	0	79	34	4	36	25	1.76
56981--57021	12	3.4	12	93	0	64	75	9	2	12	1.13
57062--57116	13	4.0	13	88	7	74	60	0	12	27	1.33
60781--60825	11	4.0	11	94	5	81	73	0	8	17	1.08
60782--60823	12	3.6	12	96	3	77	78	0	7	14	0.95
60782--60825	23	1.9	23	100	0	88	75	0	6	18	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66219--66265	23	2.1	23	84	7	62	51	12	4	31	1.59
69782--69836	20	2.8	20	85	0	74	30	16	27	25	1.96
70724--70753	16	1.9	15	93	6	51	43	33	3	20	1.68
71130--71260	48	2.6	50	78	11	124	13	25	2	58	1.48
76922--76975	24	2.2	25	78	15	60	11	22	3	62	1.43
79225--79253	14	2.1	14	100	0	58	13	6	6	72	1.26
79230--79273	20	2.1	21	87	4	63	6	4	6	81	0.97
81753--81859	56	1.9	56	86	3	153	25	21	13	40	1.89
82466--82534	20	3.5	20	82	2	86	31	15	26	26	1.96
84618--84664	20	2.3	20	85	0	67	29	36	12	21	1.91
86165--86230	18	3.4	19	76	13	64	80	4	9	6	1.02
86176--86240	22	3.0	21	82	11	78	80	3	12	4	0.99
86196--86230	9	3.8	9	88	3	52	85	2	8	2	0.79
87257--87362	48	2.2	47	85	9	135	59	1	24	14	1.45
89027--89073	20	2.3	20	85	0	67	29	36	12	21	1.91
95582--95611	15	2.1	14	93	6	51	70	6	6	16	1.31
97860--97913	23	2.2	25	78	15	60	62	3	22	11	1.43
103677--103720	11	3.7	12	87	9	63	75	9	4	11	1.19
103675--103721	24	2.0	24	95	0	85	72	10	4	12	1.25
106340--106382	17	2.5	17	100	0	86	62	0	9	27	1.25
106383--106460	25	3.0	25	80	17	79	67	6	15	10	1.39
107469--107504	12	3.1	12	92	4	56	80	5	13	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107473--107573	17	5.6	18	71	12	64	71	3	17	6	1.24
107533--107571	14	2.9	14	85	14	55	71	0	20	7	1.10
107588--107650	33	1.9	33	84	12	85	53	6	26	12	1.62
113226--113274	14	3.5	13	78	10	53	2	20	2	75	1.00
116745--116787	19	2.3	19	92	4	70	55	2	11	30	1.48
117230--117269	21	1.9	21	90	10	64	25	7	2	65	1.32
132434--132487	20	2.7	20	82	0	63	24	20	18	37	1.94
132434--132507	30	2.5	30	86	8	98	21	20	18	39	1.93
132434--132498	20	3.2	20	71	16	53	23	21	16	38	1.93
134073--134138	11	5.6	11	73	18	53	71	4	7	16	1.26
134073--134151	38	2.1	37	84	9	99	70	6	8	13	1.31
134144--134173	13	2.4	12	89	10	51	90	0	10	0	0.47

Tables:   1

The End!