Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold155
Parameters: 2 7 7 80 10 50 1000
Length:  399999

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
332724--332910
47
3.9
48
89
4
281
41
18
8
31
1.80
332724--332910
95
2.0
95
88
4
279
41
18
8
31
1.80
336337--336404
21
3.2
20
73
8
64
14
20
19
45
1.85
336332--336424
42
2.2
42
84
3
125
18
20
17
44
1.87
336355--336445
21
4.3
20
72
6
56
16
20
18
43
1.87
341270--341299
14
2.1
14
100
0
60
43
23
0
33
1.54
344968--345019
25
2.0
26
81
3
61
38
11
9
40
1.74
345126--345306
32
5.7
31
65
19
88
50
4
3
41
1.41
349475--349508
2
17.0
2
100
0
68
50
0
0
50
1.00
351213--351265
22
2.5
22
77
19
58
11
13
1
73
1.18
360272--360463
30
6.4
30
73
3
154
32
26
16
25
1.96
360272--360505
15
15.7
15
76
2
121
33
26
14
25
1.94
360347--360506
45
3.6
45
81
0
160
31
25
15
26
1.96
365993--366032
17
2.4
17
82
0
53
50
7
12
30
1.68
370482--370545
31
2.1
31
82
5
76
42
4
7
45
1.54
377711--378213
120
4.2
120
95
0
855
43
2
5
47
1.40
377951--378120
43
4.2
42
63
19
99
44
2
4
48
1.36
378344--378451
45
2.5
43
78
14
109
37
28
3
30
1.75
378432--378467
16
2.2
16
100
0
72
38
36
0
25
1.56
389331--389372
18
2.3
18
87
0
57
38
0
4
57
1.20
389930--390142
106
2.0
106
80
10
240
35
19
22
23
1.96
390036--390385
113
3.1
112
81
4
373
35
17
21
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
391126--391168
22
2.0
21
81
4
50
20
2
25
51
1.60
391264--391312
14
3.5
14
82
0
62
14
2
34
48
1.55
391277--391323
14
3.4
14
80
11
51
14
2
34
48
1.56
391264--391323
28
2.1
28
84
0
75
15
3
33
48
1.61
391449--391484
15
2.3
16
90
4
56
61
0
2
36
1.11
392490--392524
18
1.9
18
94
0
61
11
31
20
37
1.88
392759--392805
13
3.7
13
94
5
87
34
8
17
40
1.79
396837--396887
21
2.4
21
90
0
75
37
17
43
1
1.61
397254--397426
42
4.2
41
82
2
204
27
21
22
28
1.99
397272--397426
40
3.8
40
84
3
202
27
23
22
26
1.99
398048--398105
28
2.1
28
100
0
116
20
15
10
53
1.71
398753--399044
122
2.4
121
94
1
505
52
4
0
42
1.26
399168--399226
29
2.1
28
87
6
84
49
5
10
35
1.59
399229--399279
21
2.5
20
78
9
57
60
1
3
33
1.26

Tables:   1   2

The End!