Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1216
Parameters: 2 7 7 80 10 50 1000
Length:  48843

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2374--2552
40
4.6
39
74
13
161
25
26
21
26
2.00
5066--5394
45
7.4
45
69
14
159
29
19
22
28
1.98
6655--6700
22
2.1
21
84
15
58
30
8
4
56
1.49
8375--8558
40
4.7
40
80
9
184
25
26
22
25
2.00
16042--16225
78
2.3
82
82
9
229
25
27
22
24
2.00
16042--16225
40
4.7
40
83
8
225
25
27
22
24
2.00
18409--18605
98
2.0
98
93
0
340
27
11
23
37
1.89
20946--21054
53
2.1
53
91
0
173
24
22
13
39
1.90
23048--23267
79
2.8
79
80
6
205
26
27
20
24
1.99
23085--23267
40
4.6
40
80
8
187
27
27
20
24
1.99
34017--34504
47
10.3
47
95
1
832
32
8
29
29
1.87
34017--34504
96
5.1
94
95
2
832
32
8
29
29
1.87
34623--34700
36
2.1
37
90
2
122
24
19
30
25
1.98
35915--36146
40
5.8
40
90
0
365
25
22
27
24
2.00
39998--40551
47
11.7
47
95
1
952
31
8
30
29
1.87
40019--40551
239
2.3
234
95
2
942
31
8
30
29
1.87
40668--40746
37
2.1
37
90
0
122
24
18
31
25
1.98
45121--45305
79
2.3
82
85
7
247
25
27
22
23
2.00
45102--45305
40
5.1
40
83
8
247
25
27
22
24
2.00
46433--46547
55
2.1
55
95
3
205
21
23
9
45
1.81

Tables:   1

The End!