Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3138
Parameters: 2 7 7 80 10 50 1000
Length:  116776

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8104--8326
39
5.7
40
81
8
233
25
27
21
25
1.99
8258--8335
40
1.9
41
82
10
97
26
28
20
24
1.99
15966--16188
39
5.7
40
82
8
242
25
27
21
25
1.99
16120--16197
40
1.9
41
82
10
97
26
28
20
24
1.99
20918--20961
19
2.2
20
84
8
63
34
22
11
31
1.90
20929--20969
19
2.2
19
100
0
82
36
24
14
24
1.93
21704--21795
26
3.2
31
64
24
83
29
9
14
46
1.76
30864--30896
13
2.6
13
90
4
50
78
3
3
15
0.99
30934--30987
14
3.9
14
95
4
101
64
0
12
22
1.27
30934--30987
27
2.0
28
96
3
101
64
0
12
22
1.27
31726--31751
6
4.3
6
100
0
52
15
0
0
84
0.62
34203--34242
17
2.4
17
91
4
64
77
5
12
5
1.09
34220--34254
13
2.8
12
87
8
52
77
2
11
8
1.10
36435--36476
17
2.4
18
80
7
52
57
4
23
14
1.56
40299--40360
10
5.9
10
74
10
52
33
32
3
30
1.74
40299--40361
21
3.0
21
88
2
90
33
33
3
30
1.74
40685--40725
16
2.5
16
96
4
73
75
2
12
9
1.13
40660--40708
13
3.7
13
91
2
71
71
2
10
16
1.22
41860--41906
23
2.1
23
84
7
62
51
12
4
31
1.59
45709--45764
12
4.7
12
86
6
69
75
1
3
19
1.05
45806--45858
13
3.9
13
76
9
61
77
1
15
5
1.04
45811--45875
28
2.3
29
91
2
105
76
3
10
9
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46681--46726
20
2.2
20
84
3
56
65
0
26
8
1.21
46733--46768
6
6.0
6
93
0
54
33
0
27
38
1.57
50963--51024
10
5.9
10
74
10
52
33
32
3
30
1.74
50963--51025
21
3.0
21
88
2
90
33
33
3
30
1.74
55435--55481
22
2.1
22
96
0
85
31
4
40
23
1.74
63499--63549
22
2.3
21
83
6
57
37
33
1
27
1.68
63504--63566
21
3.0
21
85
2
72
34
31
3
30
1.74
63917--63956
18
2.2
18
86
0
53
65
2
25
7
1.32
67864--67910
23
2.1
23
84
7
62
51
12
4
31
1.59
69745--69775
4
8.0
4
92
7
55
77
0
0
22
0.77
71096--71148
23
2.4
22
76
20
56
9
18
1
69
1.25
72438--72471
16
2.0
18
88
11
54
14
2
11
70
1.27
73923--73962
18
2.2
18
86
0
53
65
2
25
7
1.32
77209--77255
23
2.1
23
84
7
62
51
12
4
31
1.59
82173--82213
19
2.0
19
86
13
55
4
21
0
73
1.02
84224--84295
15
4.7
15
89
6
110
22
11
5
61
1.50
84224--84296
29
2.4
30
90
6
112
23
10
5
60
1.51
84337--84381
11
4.0
11
94
5
81
17
0
8
73
1.08
84336--84378
12
3.7
12
93
6
79
13
0
6
79
0.93
84336--84381
23
2.0
23
100
0
92
17
0
8
73
1.07
85008--85062
20
2.8
20
88
0
83
25
29
16
29
1.97
87283--87329
23
2.1
23
84
7
62
51
12
4
31
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89766--89797
16
2.0
16
93
0
55
15
12
21
50
1.77
89950--90097
72
2.0
73
84
3
192
26
16
27
29
1.97
93939--93973
18
2.0
18
88
5
54
60
0
25
14
1.35
98726--98764
11
3.5
11
93
6
69
76
7
0
15
0.99
98726--98771
12
3.8
12
91
8
76
73
8
0
17
1.07
99705--99755
18
2.7
18
84
9
66
70
0
19
9
1.14
99723--99762
18
2.2
18
86
0
53
75
2
15
7
1.14
102925--102970
22
2.1
22
95
0
83
23
39
4
32
1.75
103282--103306
12
2.1
12
100
0
50
72
0
12
16
1.13
105495--105558
19
3.3
19
82
8
67
75
4
14
6
1.17
109831--109877
22
2.1
22
96
0
85
23
40
4
31
1.74
110667--110814
72
2.0
73
84
3
192
25
16
29
29
1.97

Tables:   1

The End!