genome.fa.s950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2802_ERROPOS155469
Parameters: 2 7 7 80 10 50 1000
Length:  155469

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1720--1758	20	2.0	20	85	10	53	38	12	10	38	1.78
7873--7908	16	2.2	16	90	0	54	83	0	16	0	0.65
14082--14115	17	2.0	17	88	11	52	44	0	0	55	0.99
14272--14369	45	2.2	45	85	5	128	33	28	5	32	1.79
15891--15998	54	2.0	54	85	3	146	39	7	10	42	1.67
17047--17094	24	2.0	24	100	0	96	25	25	29	20	1.99
17046--17102	24	2.5	23	86	10	73	22	29	26	21	1.99
25117--25150	17	2.0	17	88	11	52	55	0	0	44	0.99
31332--31372	6	6.8	6	83	10	57	0	17	0	82	0.66
37487--37525	20	2.0	20	85	10	53	38	10	12	38	1.78
61705--61778	6	11.8	6	72	18	53	75	2	21	0	0.92
61700--61790	24	3.7	25	70	18	75	75	2	21	0	0.90
61700--61790	13	7.9	12	67	20	52	75	2	21	0	0.90
61717--61788	28	2.6	27	81	12	76	73	2	23	0	0.96
61939--61978	19	2.0	21	85	9	57	32	40	25	2	1.69
62011--62035	13	1.9	13	100	0	50	88	0	12	0	0.53
64622--64725	29	3.5	30	85	6	124	34	15	2	47	1.60
65345--65417	6	11.7	6	71	17	51	76	1	21	0	0.86
65371--65431	20	2.9	22	78	14	74	77	1	21	0	0.86
65344--65415	10	7.0	10	72	17	58	75	1	23	0	0.89
65371--65421	19	2.7	20	87	6	70	78	0	21	0	0.75
65371--65430	23	2.5	23	84	10	68	76	1	21	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65579--65618	19	2.0	21	85	9	57	32	40	25	2	1.69
65652--65676	13	1.9	13	100	0	50	88	0	12	0	0.53
65795--65833	12	3.3	12	85	3	53	79	0	20	0	0.73
67478--67511	17	2.0	17	88	11	52	44	0	0	55	0.99
67668--67765	45	2.2	45	85	5	128	33	28	5	32	1.79
69286--69393	54	2.0	54	85	3	146	39	7	10	42	1.67
75281--75378	45	2.2	45	85	5	128	33	28	5	32	1.79
84615--84722	54	2.0	54	85	3	146	42	10	7	39	1.67
91430--91510	7	11.3	7	75	17	69	77	1	20	0	0.83
91433--91518	25	3.4	24	77	19	93	76	1	22	0	0.85
91426--91516	4	24.5	4	70	24	58	76	1	21	0	0.84
91426--91505	35	2.4	33	77	10	83	77	1	21	0	0.84
91426--91518	13	7.7	12	68	14	66	77	1	21	0	0.83
91429--91524	24	3.9	24	73	21	83	78	1	19	1	0.88
94322--94419	29	3.6	27	71	16	76	33	16	3	46	1.62
94334--94398	29	2.2	30	84	13	91	30	18	4	46	1.69
94354--94420	26	2.4	29	85	7	86	34	14	2	47	1.60
95057--95095	14	2.8	14	88	0	51	79	0	20	0	0.73
95030--95102	30	2.3	31	79	6	85	78	1	20	0	0.83
95028--95115	40	2.2	40	83	4	106	76	2	21	0	0.90
105103--105148	22	2.1	22	83	0	56	54	4	8	32	1.51
120857--120930	6	11.8	6	73	18	62	77	1	21	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120852--120942	24	3.7	25	72	18	84	76	1	21	0	0.84
120852--120940	28	3.4	27	76	14	80	76	1	22	0	0.85
121091--121130	19	2.0	21	85	9	57	32	40	25	2	1.69
121163--121187	13	1.9	13	100	0	50	88	0	12	0	0.53
123777--123880	29	3.5	30	85	6	124	34	15	2	47	1.60
123777--123888	59	1.9	58	82	12	140	35	16	2	45	1.61
124526--124593	16	4.4	15	76	14	59	79	1	17	1	0.88
124499--124571	10	7.0	10	70	20	51	76	1	21	0	0.86
124500--124587	14	6.4	13	72	19	63	77	2	20	0	0.88
124529--124577	20	2.5	20	87	9	66	79	0	20	0	0.73
124523--124593	20	3.4	19	70	24	54	78	1	18	1	0.89
124523--124586	24	2.7	24	83	9	69	78	1	20	0	0.84
124735--124774	19	2.0	21	85	9	57	32	40	25	2	1.69
124808--124832	13	1.9	13	100	0	50	88	0	12	0	0.53
124948--125001	6	9.2	6	77	18	60	81	0	18	0	0.69
130698--130731	17	2.0	17	88	11	52	44	0	0	55	0.99
130888--130985	45	2.2	45	85	5	128	33	28	5	32	1.79
132507--132614	54	2.0	54	85	3	146	39	7	10	42	1.67
134727--134857	43	3.1	43	88	1	183	29	33	16	20	1.94
136757--136783	5	5.4	5	100	0	54	18	0	0	81	0.69
139135--139347	106	2.0	106	93	0	363	27	12	12	48	1.76
139406--139548	75	1.9	74	94	1	250	27	9	9	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139247--139681	217	2.0	214	86	7	613	28	11	13	46	1.78
140236--140324	14	6.1	15	77	11	62	37	38	0	24	1.56
140326--140367	15	2.9	15	85	3	59	38	28	0	33	1.58
140553--140603	15	3.5	15	71	12	52	35	43	0	21	1.53
140934--141469	114	4.7	113	84	4	691	26	25	22	25	2.00

Tables:   1

The End!