genome.fa.s980.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3329
Parameters: 2 7 7 80 10 50 1000
Length:  1261902

Tables:   1   2   3   4   

This is table  3  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771629--771668	18	2.3	18	86	4	55	57	0	12	30	1.36
773010--773046	9	4.1	9	89	0	56	45	16	10	27	1.80
773416--773455	20	1.9	21	85	10	55	22	22	0	55	1.44
774617--774646	14	2.1	14	100	0	60	46	20	6	26	1.75
784036--784070	18	1.9	18	94	0	61	20	22	14	42	1.88
793574--793634	24	2.6	24	84	7	72	37	3	3	55	1.32
794438--794583	79	1.8	79	86	5	215	24	22	18	34	1.96
794872--794911	19	2.2	18	86	8	55	22	12	15	50	1.77
796729--796767	18	2.2	18	95	0	69	30	17	12	38	1.88
801804--801919	57	2.0	58	93	1	198	29	22	9	38	1.85
805740--805829	37	2.5	34	79	12	90	33	4	2	60	1.29
806540--806605	27	2.5	26	80	9	71	54	1	3	40	1.25
809046--809331	95	3.0	96	90	1	439	46	17	14	20	1.83
809848--809893	20	2.2	21	84	3	58	47	2	2	47	1.26
811919--811957	12	3.2	12	82	7	51	53	0	5	41	1.23
811917--811967	25	2.0	26	88	3	77	52	0	5	41	1.25
815700--815724	12	2.1	12	100	0	50	48	0	44	8	1.32
821006--821186	84	2.2	84	84	2	238	19	29	24	25	1.98
827490--827555	19	3.4	19	76	14	71	60	0	0	39	0.97
839260--839358	51	1.9	51	100	0	198	25	8	17	49	1.73
841773--841841	22	3.1	22	97	0	129	46	17	31	4	1.68
844486--845783	651	2.0	650	94	0	2274	25	24	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850108--850167	30	2.0	30	87	6	86	46	3	0	50	1.18
854879--854955	31	2.5	30	83	4	93	53	5	11	29	1.59
856518--856765	128	1.9	128	95	0	442	26	25	19	29	1.99
858753--858783	3	10.3	3	100	0	62	67	0	0	32	0.91
862386--862440	20	2.8	19	81	10	58	54	1	0	43	1.10
862409--862449	19	2.0	20	86	9	57	48	0	0	51	1.00
862466--862520	23	2.4	23	96	0	101	29	14	12	43	1.82
862466--862533	23	3.0	23	89	4	84	30	14	11	42	1.82
862621--862666	20	2.2	20	88	3	65	32	0	10	56	1.34
862635--862690	28	2.0	28	100	0	112	25	0	14	60	1.34
875270--875310	21	2.0	21	90	0	64	19	29	21	29	1.98
880919--880948	15	2.0	15	100	0	60	46	20	20	13	1.83
882652--882682	15	2.1	15	100	0	62	32	19	6	41	1.77
882308--883029	360	2.0	362	88	5	1062	30	13	11	44	1.80
886323--886377	26	2.1	27	86	3	76	25	9	25	40	1.85
886492--886550	29	2.0	29	81	12	68	22	1	16	59	1.46
888435--888483	26	1.9	26	87	4	73	26	10	22	40	1.86
891311--891348	19	2.0	19	89	0	58	36	13	0	50	1.42
893689--893721	17	1.9	17	88	11	50	39	0	0	60	0.97
902276--902307	15	2.1	15	100	0	64	34	18	6	40	1.76
908719--908750	15	2.1	15	100	0	64	40	25	0	34	1.56
914080--914114	16	2.2	16	90	10	54	62	2	0	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914096--914159	15	4.2	15	70	18	51	60	6	0	32	1.21
927700--927743	14	3.3	14	81	9	56	27	2	0	70	0.99
929381--929422	16	2.5	17	81	14	52	33	2	7	57	1.39
929602--929636	10	3.7	10	88	11	56	45	0	0	54	0.99
929837--929931	45	2.1	46	90	4	147	14	7	13	64	1.49
933860--933922	15	4.1	15	75	21	51	41	3	0	55	1.16
933860--933900	16	2.6	16	82	14	50	41	0	0	58	0.98
934646--934728	40	2.1	40	86	0	112	44	14	13	27	1.82
947651--947727	27	2.9	27	68	27	72	20	9	7	62	1.50
948379--948447	25	2.8	25	80	2	86	52	14	13	20	1.74
952450--952617	24	6.9	24	72	6	97	35	22	25	16	1.95
952577--952629	25	2.1	25	89	0	79	37	20	22	18	1.94
952936--952974	19	2.1	19	85	9	53	48	17	0	33	1.48
965191--965216	4	6.5	4	100	0	52	50	0	0	50	1.00
966386--966455	31	2.3	30	82	5	86	28	8	10	52	1.64
967849--967901	5	10.8	5	79	2	54	20	18	16	43	1.88
967849--967898	15	3.3	15	82	0	73	22	18	18	42	1.90
968195--968250	26	2.2	26	81	12	62	30	1	8	58	1.39
986387--986457	20	3.6	19	77	7	70	47	4	4	43	1.42
986469--986522	28	1.9	28	96	0	99	55	9	3	31	1.49
1001358--1001387	12	2.4	13	94	5	53	73	0	0	26	0.84
1008815--1008895	41	2.0	41	100	0	162	32	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011779--1011808	12	2.5	12	88	0	51	6	30	6	56	1.51
1017683--1017723	20	2.0	20	85	4	55	36	2	7	53	1.42
1017783--1017817	18	2.0	17	88	5	52	45	0	0	54	0.99
1017707--1017954	120	2.1	120	100	0	496	43	2	5	48	1.38
1017903--1017937	18	2.0	17	88	5	52	45	0	0	54	0.99
1018173--1018240	16	4.2	16	96	0	127	38	35	0	26	1.57
1032927--1032959	3	11.0	3	100	0	66	66	0	0	33	0.92
1033777--1033832	21	2.8	20	81	10	69	66	1	1	30	1.12
1033780--1033832	19	2.6	20	82	11	63	64	1	1	32	1.15
1037448--1037481	12	2.9	12	91	4	52	26	20	0	52	1.46
1040551--1040594	11	3.3	15	73	26	53	47	11	6	34	1.66
1040707--1040763	30	1.9	30	85	7	80	47	3	12	36	1.58
1045019--1045093	14	5.2	14	69	12	53	1	26	4	68	1.16
1046976--1047059	40	2.1	40	97	0	159	29	4	16	48	1.67
1049305--1049347	9	4.5	10	77	11	54	55	2	2	39	1.25
1051529--1051583	10	5.5	10	79	14	60	63	0	1	34	1.05
1051529--1051563	12	3.2	11	92	8	54	62	0	0	37	0.95
1051525--1051588	30	2.1	30	88	5	94	56	0	1	42	1.09
1051582--1051606	13	1.9	13	100	0	50	40	0	0	60	0.97
1054292--1054325	12	2.9	12	91	4	52	26	20	0	52	1.46
1057006--1057080	37	2.0	37	100	0	150	24	13	16	46	1.82
1073882--1073920	19	2.0	20	95	5	71	35	5	33	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073883--1073930	19	2.3	20	86	10	62	39	6	31	22	1.79
1074452--1074492	16	2.5	17	78	21	52	56	0	0	43	0.99
1074492--1074549	29	2.1	29	83	6	75	55	3	1	39	1.27
1075226--1075282	30	1.9	30	82	7	71	36	5	0	57	1.21
1075280--1075320	19	2.0	20	86	13	57	56	0	0	43	0.99
1075613--1075654	22	1.9	22	95	0	75	61	0	0	38	0.96
1075603--1075680	30	2.5	32	84	12	108	53	0	1	44	1.08
1075603--1075680	31	2.5	32	83	12	99	53	0	1	44	1.08
1076632--1076683	23	2.3	23	89	0	77	40	21	9	28	1.84
1077114--1077145	14	2.2	15	94	5	57	50	0	0	50	1.00
1087631--1087700	30	2.3	31	78	7	81	41	2	0	55	1.14
1088259--1088307	20	2.4	21	83	10	66	69	2	2	26	1.10
1088261--1088306	21	2.2	21	84	7	58	71	2	2	23	1.08
1089560--1089608	16	3.1	17	77	11	50	48	2	2	46	1.25
1090688--1090764	39	2.0	39	100	0	154	32	28	15	23	1.95
1095834--1095877	11	3.3	15	73	26	53	47	11	6	34	1.66
1095989--1096045	30	1.9	30	85	7	80	47	3	12	36	1.58
1100324--1100376	27	2.0	27	81	7	63	0	26	1	71	0.96
1103823--1103866	19	2.2	19	84	8	52	34	9	9	47	1.67
1103941--1103976	16	2.2	16	90	9	56	50	11	5	33	1.61
1103956--1104028	21	3.4	21	94	5	121	46	8	6	38	1.60
1104020--1104301	17	15.6	17	67	17	90	42	9	15	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104053--1104307	18	14.1	18	71	10	153	43	9	15	31	1.79
1104020--1104193	36	4.8	35	72	14	111	43	9	15	31	1.79
1103903--1104207	37	8.0	38	71	16	154	44	10	12	33	1.76
1104138--1104307	35	4.8	35	76	7	139	44	9	17	29	1.80
1104416--1104465	18	2.8	18	76	11	57	44	6	14	36	1.69
1105248--1105321	19	3.9	19	74	10	71	0	22	0	77	0.78
1105248--1105325	7	11.3	7	78	10	54	0	23	0	76	0.78
1105253--1105329	13	6.0	12	80	15	75	0	25	0	74	0.83
1105465--1105503	17	2.2	17	86	9	51	0	15	17	66	1.25
1109557--1109597	21	2.0	21	90	0	64	29	21	29	19	1.98

Tables:   1   2   3   4