genome.fa.s980.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3329
Parameters: 2 7 7 80 10 50 1000
Length:  1261902

Tables:   1   2   3   4   

This is table  4  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112774--1112835	28	2.2	28	88	2	88	58	3	4	33	1.36
1114251--1114318	30	2.2	31	84	7	84	38	1	5	54	1.34
1117591--1117623	3	11.0	3	93	0	57	36	0	33	30	1.58
1119203--1119235	16	2.1	16	100	0	66	30	0	6	63	1.18
1131888--1131934	19	2.4	19	85	7	58	44	6	25	23	1.77
1132455--1132495	16	2.5	17	78	21	52	56	0	0	43	0.99
1132495--1132552	29	2.1	29	83	6	75	55	3	1	39	1.27
1133245--1133301	29	1.9	30	82	3	71	45	3	1	49	1.29
1133669--1133706	20	1.9	20	94	0	67	68	0	0	31	0.90
1134680--1134725	23	2.0	23	91	0	74	39	21	8	30	1.84
1139696--1139730	15	2.2	16	90	5	54	48	14	0	37	1.44
1141290--1141365	40	1.9	40	91	0	125	11	22	30	35	1.90
1142210--1142266	24	2.4	24	84	0	69	47	8	5	38	1.57
1142226--1142272	24	2.0	24	82	0	58	51	6	4	38	1.47
1145499--1145564	31	2.1	31	89	10	100	54	1	1	42	1.18
1147976--1148009	12	2.9	12	91	4	52	26	20	0	52	1.46
1151474--1151543	31	2.3	31	82	7	81	47	5	12	34	1.66
1156352--1156384	15	2.2	15	89	10	50	21	6	0	72	1.05
1157968--1158042	9	7.8	10	76	10	59	65	2	1	30	1.15
1157971--1158011	20	2.0	21	90	4	66	58	4	0	36	1.20
1164296--1164336	21	2.0	21	90	0	64	29	21	29	19	1.98
1167509--1167570	28	2.2	28	85	2	79	59	3	4	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168977--1169044	30	2.2	31	84	7	84	38	1	5	54	1.34
1172254--1172289	3	12.0	3	93	0	63	36	0	33	30	1.58
1178058--1178141	30	2.9	29	75	10	89	41	2	0	55	1.12
1178089--1178152	25	2.9	21	75	18	67	50	0	0	50	1.00
1178066--1178141	28	2.5	31	77	8	86	43	2	0	53	1.14
1179317--1179367	13	3.8	13	77	15	50	60	1	1	35	1.19
1179316--1179354	12	3.2	12	85	3	51	58	0	2	38	1.12
1179323--1179368	12	3.3	14	82	17	60	65	2	0	32	1.05
1182588--1182628	21	2.0	21	81	18	50	21	26	19	31	1.97
1186732--1186765	12	2.9	12	91	4	52	26	20	0	52	1.46
1189675--1189730	25	2.2	26	81	9	62	64	0	1	33	1.04
1194113--1194555	216	2.1	216	93	1	764	31	21	17	30	1.96
1199574--1199607	2	17.0	2	93	0	59	50	2	0	47	1.16
1200635--1200874	51	4.8	50	77	8	211	28	26	17	27	1.97
1200688--1200913	51	4.5	51	76	10	223	27	26	17	27	1.97
1200688--1200971	102	2.8	100	86	4	374	28	27	16	27	1.97
1200629--1200954	51	6.5	50	74	7	180	28	26	16	28	1.97
1200629--1200971	153	2.3	149	78	6	361	29	26	16	27	1.97
1202399--1202448	23	2.2	23	82	3	57	44	0	0	56	0.99
1202456--1202515	28	2.2	28	85	5	79	53	3	1	41	1.27
1204219--1204275	29	1.9	30	82	3	71	45	3	1	49	1.29
1204256--1204313	28	2.1	28	82	17	70	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204249--1204313	26	2.3	28	84	10	80	50	0	3	46	1.17
1204526--1204560	2	17.5	2	100	0	70	51	0	0	48	1.00
1204865--1204898	10	3.1	11	87	12	52	64	0	0	35	0.94
1204852--1204911	30	2.0	31	86	3	86	56	0	1	41	1.09
1220197--1220238	21	2.0	20	90	4	66	38	9	7	45	1.64
1220715--1220758	10	4.4	10	79	0	52	34	0	4	61	1.16
1220730--1220762	16	2.1	16	100	0	66	30	0	6	63	1.18
1222167--1222200	12	2.9	12	95	4	61	26	23	0	50	1.50
1225937--1225977	21	2.0	21	100	0	82	36	9	9	43	1.71
1226236--1226260	3	8.3	3	100	0	50	68	0	0	32	0.90
1227702--1227748	22	2.2	21	84	3	58	51	0	2	46	1.13
1228316--1228355	21	1.9	21	90	10	64	65	2	0	32	1.06
1228310--1228373	29	2.1	31	85	5	87	56	1	1	40	1.18
1234595--1234646	26	2.0	26	100	0	104	34	23	15	26	1.94
1248175--1248204	9	3.4	9	95	4	53	23	13	53	10	1.69
1248636--1249012	44	8.7	44	74	11	271	25	23	21	29	1.99
1248636--1249012	87	4.3	87	74	7	302	25	23	21	29	1.99
1248678--1249068	174	2.3	170	85	5	509	25	23	20	30	1.98
1248718--1249010	46	6.8	41	73	10	167	26	22	20	29	1.99
1249172--1249412	44	5.5	44	69	15	185	26	24	21	26	2.00
1249056--1249448	88	4.5	88	91	2	589	24	23	22	29	1.99
1249216--1249442	44	5.2	44	66	12	169	24	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251582--1251611	8	3.6	8	95	4	51	13	0	13	73	1.10

Tables:   1   2   3   4

The End!