genome.fa.s99.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3723_ERROPOS41587+
Parameters: 2 7 7 80 10 50 1000
Length:  657619

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379886--380107	104	2.1	104	89	4	349	18	18	31	31	1.95
380028--380178	71	2.1	72	90	1	232	24	17	27	30	1.97
382988--383139	27	5.6	27	93	3	241	26	13	28	30	1.94
382988--383139	55	2.8	55	94	0	259	26	13	28	30	1.94
390979--391130	27	5.6	27	93	3	241	26	13	28	30	1.94
390979--391130	55	2.8	55	94	0	259	26	13	28	30	1.94
394883--395061	37	4.9	37	93	1	288	26	30	18	24	1.98
394883--395060	73	2.4	73	91	3	286	26	30	18	24	1.98
395211--395345	48	2.8	48	93	0	225	30	28	7	33	1.85
395315--395508	47	4.1	47	94	0	325	26	28	11	32	1.92
395383--395460	23	3.2	25	64	29	69	29	32	10	28	1.90
395408--395483	22	3.3	22	65	28	59	25	31	13	30	1.93
406564--406684	51	2.4	51	81	5	138	27	14	31	27	1.94
408463--408496	16	2.2	15	89	5	50	55	0	0	44	0.99
410447--410483	20	1.9	18	89	10	56	54	8	0	37	1.30
411332--411361	12	2.4	12	94	5	51	60	0	0	40	0.97
413394--413729	50	6.7	50	77	4	345	30	25	18	26	1.98
413453--413734	101	2.8	101	87	0	393	31	24	18	25	1.97
413394--413776	50	7.6	50	76	5	344	31	24	18	25	1.97
420314--420674	180	2.0	178	85	3	492	33	19	7	39	1.80
421236--421521	101	2.8	100	79	4	315	29	25	17	26	1.98
421228--421517	151	1.9	151	87	1	420	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421227--421564	50	6.7	50	80	6	317	30	25	17	26	1.97
427643--427805	44	3.8	43	76	15	149	32	27	17	22	1.96
438134--438211	27	2.9	27	86	0	93	43	15	15	25	1.86
447807--447981	27	6.5	26	78	8	165	41	19	9	30	1.82
447807--447981	53	3.3	53	80	7	183	41	19	9	30	1.82
447991--448189	27	7.4	27	86	2	274	30	21	7	40	1.81
447991--448189	81	2.5	81	90	3	319	30	21	7	40	1.81
448087--448308	27	8.2	27	81	1	131	35	22	8	33	1.85
447993--448218	81	2.8	81	85	4	294	31	21	7	39	1.82
447993--448218	54	4.2	54	83	5	251	31	21	7	39	1.82
447885--448310	54	7.9	54	77	5	191	35	19	8	35	1.84
448292--448666	27	14.3	27	85	6	475	33	19	21	25	1.97
448368--448403	18	2.0	18	100	0	72	44	11	22	22	1.84
450713--450969	40	6.5	40	86	2	324	22	23	28	26	1.99
458854--459110	40	6.5	40	88	2	342	23	24	27	24	2.00
460579--460666	6	14.3	6	73	13	72	19	18	14	47	1.82
460556--460666	31	3.5	31	91	1	150	19	17	14	48	1.81
466270--466303	17	1.9	18	88	5	52	20	5	11	61	1.50
474609--474739	43	3.1	42	78	8	122	26	16	25	32	1.96
478921--479069	43	3.5	43	79	8	151	32	24	18	24	1.97
479238--479331	32	2.9	32	100	0	188	30	24	9	35	1.87
488207--488376	45	3.8	45	91	3	272	23	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488207--488376	89	1.9	89	91	4	281	23	21	27	28	1.99
490789--490857	34	2.0	34	88	0	102	34	20	28	15	1.94
492682--492854	46	3.8	45	77	13	163	20	19	29	30	1.97
492675--492847	93	1.9	93	88	0	265	20	19	29	30	1.97
509256--509300	23	1.9	24	81	4	56	44	8	8	37	1.67
518128--518231	41	2.5	41	78	6	111	27	26	20	25	1.99
521237--521391	47	3.0	51	79	13	167	29	14	25	30	1.95
521237--521526	48	5.9	48	79	7	228	28	14	26	30	1.95
522251--522302	26	2.1	26	83	16	67	48	0	21	30	1.51
523121--523191	24	3.0	24	89	0	106	35	2	36	25	1.71
524578--524689	27	4.1	27	84	7	138	15	24	23	37	1.93
524578--524689	54	2.1	54	88	3	163	15	24	23	37	1.93
531530--532122	47	12.6	47	94	1	992	29	29	8	33	1.86
536144--536452	40	7.8	40	89	1	444	25	27	21	25	1.99
537859--538448	47	12.6	47	93	2	1001	29	29	8	32	1.86
541948--542044	45	2.2	45	86	0	131	35	25	15	23	1.94
561712--561903	47	4.1	47	87	1	271	32	12	29	25	1.92
561862--562008	50	3.0	50	93	3	244	37	8	24	29	1.84
561874--562032	50	3.2	50	80	9	173	33	6	27	31	1.83
562158--562229	37	1.9	37	91	0	117	22	18	30	29	1.97
574613--574641	13	2.3	13	94	5	51	27	0	10	62	1.28
584345--584447	37	2.8	37	95	0	179	24	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588199--588331	29	4.7	29	80	6	146	32	30	15	22	1.94
588199--588331	57	2.3	57	83	5	144	32	30	15	22	1.94
588337--588567	40	5.8	40	91	1	340	26	29	22	21	1.99
594980--595024	21	2.1	21	83	4	54	37	4	0	57	1.19
597318--597363	24	1.9	24	100	0	92	58	6	8	26	1.52
599046--599240	49	4.0	48	80	5	237	27	26	20	26	1.99
599051--599238	100	1.9	100	93	0	322	27	25	20	26	1.99
611703--611777	27	2.7	27	70	2	69	33	41	12	13	1.81
612319--612365	25	1.9	24	86	4	67	36	12	10	40	1.78
613550--613580	4	7.8	4	92	0	53	25	45	3	25	1.69
613578--613615	4	9.5	4	100	0	76	50	23	0	26	1.50
624511--624560	22	2.3	22	89	0	73	20	12	8	60	1.57
628359--628442	41	2.1	39	82	10	100	59	3	1	35	1.22
628648--628729	34	2.4	35	81	6	96	42	2	1	53	1.21
631466--631631	46	3.7	46	75	11	155	29	29	19	21	1.98
634352--634406	29	1.9	28	88	3	83	20	20	23	36	1.95
640325--640448	39	3.2	39	91	0	203	27	30	20	20	1.98
650456--650606	28	5.4	28	91	1	214	33	28	12	25	1.92
657097--657122	12	2.2	12	100	0	52	23	0	19	57	1.40

Tables:   1   2

The End!