Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1650.1
Parameters: 2 7 7 80 10 50 1000
Length:  394711

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242123--243939
218
8.3
218
79
7
1624
27
21
20
30
1.98
242417--243227
262
3.1
262
88
2
1060
27
21
20
30
1.98
242994--243546
228
2.5
218
82
8
716
28
22
19
30
1.98
243262--243933
44
15.5
44
70
12
275
26
21
20
31
1.98
243346--243623
85
3.2
85
79
6
371
27
20
20
31
1.98
243343--243718
172
2.2
172
96
0
689
26
21
21
30
1.98
245179--245229
7
7.6
7
86
8
79
13
11
0
74
1.07
245173--245230
13
4.3
14
91
2
75
13
12
0
74
1.08
246220--246273
6
8.7
6
85
4
63
14
3
11
70
1.29
249638--249833
110
1.8
108
82
3
250
32
18
16
32
1.93
249733--250118
193
2.0
193
97
0
727
38
11
15
33
1.85
250197--250239
17
2.4
18
76
7
52
69
4
6
18
1.29
250533--250606
3
24.7
3
72
15
55
66
2
5
25
1.27
250536--250582
22
2.2
21
81
11
51
65
4
4
25
1.29
250544--250780
119
2.0
119
96
0
440
55
6
15
21
1.63
250680--250721
10
4.1
10
79
14
50
64
0
7
28
1.20
250666--250729
21
3.0
21
78
17
71
65
1
4
28
1.21
250666--250723
12
5.4
11
81
12
59
63
1
5
29
1.25
250667--250727
30
2.1
29
84
9
79
67
1
4
26
1.20
251702--251749
20
2.3
21
79
10
55
10
4
22
62
1.44
254649--254690
20
2.2
18
87
8
57
2
16
4
76
1.07
263846--263884
20
2.0
20
100
0
78
15
15
30
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271961--271987
3
9.0
3
100
0
54
33
33
0
33
1.58
287607--287648
20
2.1
20
86
8
59
52
0
7
40
1.29
298504--298685
91
2.0
91
97
0
346
29
10
8
50
1.68
307033--307076
20
2.2
20
87
0
61
61
9
2
27
1.38
311378--311425
25
2.0
25
91
4
80
47
41
4
6
1.48
321414--321467
24
2.2
25
77
9
58
38
3
7
50
1.48
327827--328019
44
4.6
44
75
12
179
40
7
12
38
1.73
327866--327976
37
2.9
37
77
10
100
39
8
11
40
1.71
329152--329202
21
2.4
22
81
12
63
31
0
3
64
1.11
341908--341946
20
1.9
21
94
5
71
61
2
0
35
1.10
346964--347053
45
2.0
45
97
0
171
8
24
1
65
1.28
353131--353226
51
1.9
49
82
4
120
42
7
18
31
1.78
355617--355704
30
3.0
30
80
5
99
37
14
15
31
1.89
356488--356539
24
2.2
24
89
0
77
55
9
1
32
1.43
362956--363051
27
3.6
27
97
0
174
22
26
18
32
1.97
368444--368635
50
3.7
50
88
4
240
20
28
23
27
1.99
368730--368761
13
2.5
13
94
0
55
56
12
0
31
1.37
369564--369621
21
2.7
22
89
10
93
67
17
15
0
1.24
373778--374251
251
1.9
251
99
0
939
36
17
17
27
1.93
380960--381152
50
3.8
50
90
0
296
20
30
23
26
1.98
381247--381277
13
2.4
13
94
0
53
54
12
0
32
1.38
381490--381545
30
1.9
29
82
7
69
32
23
1
42
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389923--389977
28
2.0
28
81
0
65
47
3
1
47
1.30

Tables:   1   2

The End!