genome.fa.s110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_110
Parameters: 2 7 7 80 10 50 1000
Length:  197764

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7177--7226	17	2.7	20	78	18	70	10	0	44	46	1.37
16009--16049	20	2.0	20	85	0	55	29	41	7	21	1.80
16239--16272	16	2.1	16	88	0	50	50	14	17	17	1.79
19067--19107	21	2.0	21	90	0	64	29	21	29	19	1.98
21005--21038	16	2.1	16	88	0	50	50	14	17	17	1.79
27403--27438	14	2.6	14	86	0	54	72	0	8	19	1.10
27403--27445	14	3.2	13	80	9	50	69	0	9	20	1.15
27564--27608	23	2.0	23	86	8	65	62	13	0	24	1.31
29862--30040	87	2.1	87	94	0	313	24	25	22	28	1.99
29865--30579	88	8.1	88	77	9	568	23	24	23	28	1.99
29937--30614	177	3.9	177	90	2	1001	23	23	24	28	2.00
32105--32151	15	3.1	15	85	11	69	12	19	0	68	1.21
32105--32143	8	5.1	8	81	12	55	12	20	0	66	1.24
32105--32163	15	3.9	15	85	12	50	13	18	0	67	1.22
32669--32721	25	2.2	24	86	10	72	1	9	5	83	0.89
32685--32709	11	2.3	11	100	0	50	0	8	8	84	0.79
33529--33572	22	2.0	22	82	8	54	56	4	15	22	1.57
36837--36897	31	2.0	31	93	3	106	32	3	11	52	1.54
38731--38774	18	2.4	18	85	11	54	63	2	6	27	1.31
41379--41409	13	2.4	13	94	0	53	61	3	0	35	1.12
41801--41879	39	2.0	40	85	2	106	21	30	25	22	1.99
42061--42126	11	5.9	11	78	7	62	22	27	1	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42061--42134	22	3.4	22	74	12	71	24	25	1	48	1.59
42066--42130	33	1.9	34	87	9	98	23	26	0	50	1.49
42097--42193	51	1.9	50	87	6	142	27	24	1	46	1.59
43336--43361	7	3.7	7	100	0	52	26	0	15	57	1.38
45148--45239	20	4.6	20	78	15	75	60	1	2	35	1.16
45140--45196	20	2.9	21	79	10	66	63	0	1	35	1.05
45169--45234	19	3.3	18	78	19	69	63	1	1	33	1.13
45485--45558	10	7.1	11	71	17	52	33	1	0	64	1.02
45501--45556	20	2.8	21	72	8	62	37	1	0	60	1.07
45484--45542	30	2.0	29	83	9	75	38	1	0	59	1.08
45475--45545	29	2.5	28	77	11	72	35	2	1	60	1.20
46203--46251	24	2.0	24	100	0	98	14	16	20	48	1.80
47019--47089	18	3.9	18	90	0	97	29	23	15	30	1.95
59250--59405	42	3.7	41	75	17	158	24	17	26	30	1.97
65184--65218	17	2.2	17	90	10	56	34	0	0	65	0.93
69101--69162	29	2.3	26	86	8	79	61	0	0	38	0.96
69170--69207	21	1.9	20	89	10	60	63	0	7	28	1.23
74989--75062	29	2.5	29	82	4	85	25	13	13	47	1.79
76052--76095	21	2.1	21	100	0	88	45	13	9	31	1.75
94681--94727	25	1.9	24	83	12	60	36	2	4	57	1.30
97237--97278	21	2.0	21	85	0	57	45	9	4	40	1.58
98594--98684	45	2.0	45	85	2	121	27	6	28	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98848--98882	18	2.0	17	88	5	52	54	0	0	45	0.99
98735--99050	156	2.0	157	96	0	589	42	3	5	48	1.44
98984--99038	15	3.4	16	80	16	53	50	1	0	47	1.11
99004--99038	18	2.0	17	88	5	52	54	0	0	45	0.99
98987--99211	120	1.9	119	95	0	405	47	6	1	44	1.36
99124--99158	18	2.0	17	88	5	52	54	0	0	45	0.99
99212--99293	26	3.0	27	75	12	87	52	2	1	43	1.22
102174--102304	67	1.9	69	87	3	194	51	9	8	30	1.65
102746--102818	23	3.3	23	66	11	71	47	4	2	45	1.36
103588--103636	21	2.3	22	82	3	64	40	22	12	24	1.88
105848--105917	9	7.8	9	96	0	113	38	28	10	22	1.87
109851--109965	57	2.0	57	80	12	130	27	15	19	37	1.92
110215--110274	23	2.5	25	79	15	65	43	6	1	48	1.39
114073--114113	20	2.0	20	85	0	55	29	41	7	21	1.80
114908--115003	31	3.1	31	95	3	174	31	9	13	45	1.75
120499--120593	32	3.1	31	93	4	165	31	9	12	46	1.74
122636--122674	20	2.0	20	84	0	51	53	33	5	7	1.51
123068--123112	17	2.5	18	85	7	56	11	4	4	80	1.01
123838--123870	17	1.9	17	88	11	50	21	0	12	66	1.23
123915--123949	3	11.3	3	93	6	61	31	0	2	65	1.07
123985--124063	33	2.5	33	80	8	85	43	10	1	45	1.45
141521--141567	25	1.9	24	82	4	58	61	4	6	27	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141642--141698	26	2.1	28	83	9	73	40	0	3	56	1.17
141663--141706	21	2.1	21	83	4	54	34	2	2	61	1.21
142219--142293	22	3.3	23	72	17	66	48	1	2	48	1.24
142446--142500	21	2.6	21	76	0	65	27	34	10	27	1.90
143425--143551	63	2.0	63	96	0	236	26	4	13	55	1.58
150770--151298	132	4.0	132	90	0	808	28	20	25	25	1.99
152004--152037	14	2.5	14	90	4	52	35	50	11	2	1.54
151979--152070	44	2.1	44	97	0	175	41	40	8	9	1.69
152575--152609	6	5.5	6	90	10	52	0	14	5	80	0.89
153359--153384	13	2.0	13	100	0	52	46	7	0	46	1.31
157774--157813	20	2.0	21	90	5	64	32	30	2	35	1.71
159391--159426	17	2.1	17	94	0	63	22	16	19	41	1.90
159601--159806	107	1.9	107	91	2	333	33	7	12	46	1.69
159824--159868	19	2.3	19	84	3	54	46	0	0	53	1.00
162478--162577	25	4.0	25	82	0	119	8	25	18	49	1.74
163009--163034	7	3.7	7	100	0	52	57	0	0	42	0.98
164087--164200	21	5.4	21	66	12	54	14	4	37	42	1.66
164897--164930	16	2.1	16	89	10	52	35	0	5	58	1.22
169466--169528	21	3.0	21	88	6	92	31	15	22	30	1.95
175140--175201	28	2.2	28	91	2	99	61	0	0	38	0.96
175208--175253	19	2.4	18	82	10	56	65	0	4	30	1.12
175207--175243	20	1.9	20	88	5	58	67	0	5	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175226--175311	38	2.3	38	80	4	95	59	4	5	30	1.41
179726--179783	23	2.5	24	80	11	66	60	5	0	34	1.19
180012--180046	16	2.1	17	89	5	54	28	0	0	71	0.86
185362--185402	21	2.0	21	90	0	64	19	29	21	29	1.98
191590--191649	23	2.5	25	79	15	65	43	6	1	48	1.39
191874--191912	18	2.1	18	85	4	51	51	0	0	48	1.00
191876--191915	20	2.0	20	85	0	53	52	0	0	47	1.00
193623--193666	13	3.4	12	84	9	52	59	0	11	29	1.32
193924--193987	21	3.1	20	80	6	83	17	21	25	35	1.95
196971--197012	21	2.0	21	85	0	57	45	11	4	38	1.62

Tables:   1

The End!