genome.fa.s1196.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold301
Parameters: 2 7 7 80 10 50 1000
Length:  1013018

Tables:   1   2   3   4   

This is table  2  of  4  ( 464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293849--293983	66	2.0	67	82	5	166	38	6	8	45	1.62
294918--294943	2	13.0	2	100	0	52	50	0	0	50	1.00
295830--295856	2	13.5	2	100	0	54	48	0	0	51	1.00
318174--318214	21	2.0	21	85	4	57	53	2	2	41	1.27
325234--325428	51	3.8	50	82	2	219	32	26	15	25	1.95
325233--325426	102	1.9	102	84	2	264	32	26	15	24	1.95
344219--344333	56	2.1	56	94	0	203	26	10	20	43	1.83
345988--346065	28	2.8	28	82	3	95	21	19	26	32	1.97
346279--346341	14	4.5	14	70	7	56	19	20	30	30	1.97
350578--350602	9	2.8	9	100	0	50	24	0	8	68	1.16
355732--355781	22	2.2	23	82	13	68	20	10	6	64	1.45
355735--355784	21	2.3	23	89	6	77	20	10	8	62	1.52
361111--361162	3	17.3	3	100	0	104	67	0	32	0	0.91
361350--361457	53	2.0	53	92	0	180	33	0	13	52	1.41
361755--361912	50	3.1	50	66	18	135	29	0	15	53	1.47
361653--361968	103	3.1	104	85	8	391	28	0	14	56	1.44
361932--361960	15	1.9	15	100	0	58	37	0	6	55	1.27
363950--363983	13	2.6	13	85	0	50	41	38	0	20	1.53
364091--364211	9	13.4	9	86	6	147	25	7	23	42	1.80
364662--364725	33	1.9	33	83	0	83	17	46	14	21	1.83
364922--365100	79	2.2	80	91	2	281	25	6	8	59	1.51
381208--381235	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384625--384681	29	2.0	29	86	6	80	31	1	1	64	1.13
385178--385211	5	6.8	5	87	12	52	82	2	0	14	0.79
387163--387219	29	2.0	29	86	6	80	31	1	1	64	1.13
387716--387749	5	6.8	5	87	12	52	82	2	0	14	0.79
389508--389547	21	2.0	20	85	5	53	60	5	0	35	1.19
391200--391352	72	2.1	73	81	2	184	33	22	16	27	1.96
397921--397949	5	6.0	5	96	4	51	37	0	0	62	0.96
397918--397950	15	2.4	14	85	14	50	33	0	0	66	0.92
398071--398099	5	6.0	5	96	4	51	37	0	0	62	0.96
397903--398203	150	2.0	151	99	0	595	38	12	7	40	1.73
398068--398100	15	2.4	14	85	14	50	33	0	0	66	0.92
414648--414686	18	2.2	18	86	9	53	7	20	2	69	1.26
415494--415528	17	2.1	17	89	10	54	77	2	0	20	0.90
415586--415641	15	3.6	16	86	9	64	64	0	1	33	1.04
416130--416162	3	11.0	3	100	0	66	0	33	0	66	0.92
416805--416846	16	2.6	16	84	0	57	11	0	33	54	1.37
418451--418599	43	3.5	43	81	5	162	30	14	24	30	1.95
420422--420584	46	3.6	46	78	6	188	27	3	19	49	1.65
420582--420811	29	7.9	28	73	6	129	27	16	19	36	1.93
420582--420716	59	2.3	59	84	3	166	27	17	20	35	1.94
423235--423284	20	2.5	21	81	12	54	32	8	8	52	1.60
423329--423871	271	2.0	272	99	0	1079	35	8	9	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428517--428584	22	3.1	22	81	8	84	41	19	23	16	1.90
429688--429788	13	7.7	13	70	16	75	55	2	0	40	1.22
429698--429788	5	18.6	5	72	18	68	56	3	1	39	1.23
430065--430102	18	2.0	19	85	10	51	42	15	0	42	1.47
446861--446892	12	2.6	13	85	14	50	71	0	0	28	0.86
448005--448041	17	2.2	16	90	4	56	48	5	16	29	1.68
448187--448215	2	14.5	2	100	0	58	0	48	0	51	1.00
451158--451190	17	1.9	17	93	0	57	45	6	24	24	1.75
452814--452919	28	3.8	28	77	5	106	61	3	12	22	1.47
453937--453978	21	2.0	21	81	9	50	35	9	2	52	1.47
456853--456881	14	2.0	15	93	6	51	27	0	6	65	1.18
458188--458221	6	5.7	6	100	0	68	0	14	0	85	0.60
458941--459005	28	2.2	30	83	8	89	30	1	0	67	1.00
463729--463829	35	2.9	35	81	0	121	27	16	27	27	1.97
465493--465562	37	1.9	36	82	8	88	52	2	2	41	1.31
466468--466508	6	6.7	6	86	5	55	19	29	2	48	1.61
466708--466760	21	2.5	21	78	0	61	28	22	28	20	1.99
466750--466799	23	2.2	23	92	0	82	36	22	20	22	1.96
467955--468013	27	2.2	26	77	11	66	10	10	6	72	1.27
468417--468582	84	2.0	84	92	0	278	22	19	6	52	1.67
468874--469416	280	2.0	271	86	5	750	24	20	17	36	1.94
469386--469434	9	5.3	9	92	2	71	38	0	4	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474858--474901	21	2.1	21	91	0	70	29	38	15	15	1.89
475398--475535	4	34.2	4	78	7	91	28	15	22	33	1.94
475405--475524	29	4.2	29	82	11	133	30	14	21	34	1.93
475398--476738	8	169.8	8	81	8	536	25	7	24	43	1.79
475543--476734	4	298.5	4	81	4	1226	24	6	24	44	1.76
476407--476451	2	22.5	2	86	0	63	6	0	42	51	1.28
476898--477201	151	2.0	152	98	1	592	32	9	16	41	1.80
477936--478003	36	1.9	34	82	11	84	27	2	5	63	1.32
496072--496115	22	2.0	22	100	0	88	31	13	4	50	1.62
496409--496449	16	2.5	17	80	11	50	43	0	0	56	0.99
501710--502077	41	9.0	41	90	2	508	21	22	27	28	1.99
502078--502122	20	2.2	20	84	0	54	24	6	6	62	1.44
502724--502783	28	2.1	28	84	6	77	30	0	38	31	1.58
503809--503848	21	2.0	20	90	9	64	35	40	0	25	1.56
504234--504285	3	17.3	3	100	0	104	32	0	0	67	0.91
508191--508421	43	5.4	43	85	0	284	22	17	32	26	1.96
508189--508421	129	1.8	128	86	0	340	22	17	32	27	1.96
519551--519774	94	2.4	93	85	3	288	30	20	20	28	1.97
537009--537043	18	2.0	17	88	5	52	45	0	0	54	0.99
537208--537293	44	1.9	45	85	2	120	36	29	6	27	1.83
537282--537312	16	1.9	16	100	0	62	38	32	0	29	1.57
544909--544938	15	2.0	15	93	0	51	70	0	13	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545345--545440	47	2.0	47	100	0	192	31	4	14	50	1.62
546598--546640	21	2.0	21	86	8	61	23	34	0	41	1.55
546919--546950	16	2.0	16	93	0	55	28	28	0	43	1.55
546938--546982	20	2.2	21	84	11	58	22	33	0	44	1.53
568840--568876	19	1.9	19	94	0	65	27	21	24	27	1.99
576538--576565	9	3.1	9	100	0	56	57	21	0	21	1.41
577580--577630	23	2.2	23	89	6	77	41	19	9	29	1.84
580528--580561	9	3.7	9	88	4	50	23	0	8	67	1.18
580590--580630	17	2.3	18	83	12	57	29	4	2	63	1.28
580701--580759	30	2.0	30	96	0	109	22	25	25	27	2.00
580698--580756	18	3.6	18	68	25	58	25	23	23	27	2.00
580844--580893	17	2.8	18	87	6	75	42	42	0	16	1.47
580875--580952	38	2.0	39	92	2	131	51	28	3	16	1.62
581076--581150	37	2.0	37	92	0	123	36	5	14	44	1.68
581764--581917	76	2.0	77	98	1	301	44	7	7	40	1.62
588473--588503	15	2.1	15	93	0	53	25	29	6	38	1.81
591079--591117	19	2.1	19	90	4	62	43	0	0	56	0.99
594797--594830	2	17.0	2	93	0	59	50	2	0	47	1.16
596723--596771	16	3.0	16	77	11	55	67	0	8	24	1.18
614435--614503	35	2.0	35	97	0	129	47	11	13	27	1.76
618579--618620	20	2.1	20	95	0	75	40	2	35	21	1.66
629887--629924	5	7.6	5	100	0	76	42	18	0	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632818--633234	67	6.3	67	81	3	416	37	15	21	25	1.93
632815--633265	134	3.4	132	79	5	471	37	15	21	25	1.93
642187--642222	13	3.0	13	84	15	51	63	5	8	22	1.43
647436--647497	26	2.4	27	76	10	76	27	19	9	43	1.82
647409--647507	25	3.9	26	67	9	69	33	16	9	41	1.79
671049--671264	40	5.6	39	67	18	121	23	23	19	33	1.97
671089--671300	36	5.7	36	65	14	115	23	24	19	32	1.98
671046--671311	76	3.5	76	84	4	313	24	23	19	32	1.98
674858--675209	41	8.6	41	81	6	342	25	19	23	32	1.97
674858--675207	82	4.3	82	80	6	381	25	19	22	32	1.97

Tables:   1   2   3   4