genome.fa.s1293.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold233
Parameters: 2 7 7 80 10 50 1000
Length:  993233

Tables:   1   2   3   

This is table  3  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884972--885018	22	2.1	22	96	0	85	46	25	12	14	1.80
885477--885507	9	3.4	9	95	0	53	35	0	6	58	1.24
887397--887443	20	2.3	20	85	7	60	27	29	17	25	1.97
910222--910263	21	2.0	21	100	0	84	28	9	0	61	1.27
912345--912566	50	4.3	50	80	7	205	22	27	21	27	1.99
912331--912566	100	2.3	102	80	7	246	23	27	20	27	1.99
923209--923359	20	7.6	20	66	14	78	16	28	17	37	1.91
923209--923411	80	2.5	80	82	4	239	17	28	17	36	1.93
923209--923406	40	4.9	40	81	3	202	16	28	18	36	1.92
923252--923390	20	6.9	20	70	6	93	13	30	19	36	1.90
924504--924577	22	3.3	22	77	5	69	43	20	20	16	1.88
924569--924678	32	3.5	32	79	1	123	37	21	21	19	1.95
924678--924731	26	2.1	26	89	0	81	37	22	20	20	1.95
924847--924952	24	4.4	24	83	2	124	45	24	9	20	1.81
924994--925279	27	10.6	27	78	3	234	22	19	19	39	1.93
925001--925279	54	5.2	54	81	1	290	21	19	19	39	1.93
924991--925279	81	3.6	81	82	0	335	21	19	20	38	1.93
925496--925767	121	2.2	121	98	0	517	29	34	15	20	1.94
927480--927512	17	1.9	17	93	0	57	36	6	15	42	1.71
929062--929336	29	9.5	29	81	1	264	38	12	25	24	1.90
929073--929336	87	3.0	87	82	0	339	38	10	25	24	1.88
931088--931126	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931377--931569	50	3.7	50	79	4	179	25	27	19	26	1.99
940865--940990	62	2.0	62	100	0	252	21	14	24	39	1.90
944429--944455	14	1.9	14	100	0	54	37	7	14	40	1.74
944672--944710	18	2.1	18	85	9	51	43	2	2	51	1.29
944728--944767	19	2.2	19	86	4	55	40	0	2	57	1.12
975562--975590	13	2.1	14	93	6	51	68	13	6	10	1.37
978958--978997	19	2.0	20	85	9	55	37	12	27	22	1.90

Tables:   1   2   3

The End!