genome.fa.s1351.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold294
Parameters: 2 7 7 80 10 50 1000
Length:  684262

Tables:   1   2   

This is table  2  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366896--367198	145	2.1	144	90	3	475	37	20	14	27	1.91
369212--369238	2	13.5	2	100	0	54	51	0	0	48	1.00
382391--382593	101	2.0	102	99	0	399	31	17	18	32	1.94
385409--385657	101	2.5	101	86	0	345	24	14	32	28	1.94
407522--407569	15	3.1	15	84	3	60	52	0	18	29	1.46
408232--408266	16	2.1	17	89	5	54	45	0	0	54	0.99
417303--417422	58	2.1	59	98	1	233	45	19	13	22	1.85
418434--418461	3	9.3	3	100	0	56	35	0	0	64	0.94
418494--418538	23	2.1	20	84	12	54	24	0	6	68	1.13
419922--419999	38	2.1	38	85	4	104	32	43	11	12	1.79
426801--426899	49	2.0	49	96	0	180	44	17	11	27	1.82
427600--427750	45	3.2	44	81	10	144	42	20	17	19	1.89
428307--428331	2	12.5	2	100	0	50	52	0	0	48	1.00
429569--429636	24	2.8	24	84	4	66	42	2	1	52	1.25
437643--437690	15	3.2	15	78	0	60	27	35	4	33	1.76
437631--437690	30	2.0	30	93	0	102	28	35	6	30	1.83
438271--438318	15	3.2	15	78	0	60	27	35	4	33	1.76
438259--438318	30	2.0	30	93	0	102	28	35	6	30	1.83
444824--445042	109	2.0	110	99	0	431	29	7	12	50	1.67
464379--464405	2	13.5	2	100	0	54	48	0	0	51	1.00
478107--478146	2	20.0	2	84	0	53	57	0	0	42	0.98
480975--481033	31	1.9	31	85	0	82	27	15	20	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480977--481044	31	2.2	31	81	5	75	30	16	16	36	1.90
481286--481322	19	2.0	18	89	5	56	70	0	0	29	0.88
488943--488976	16	2.1	16	88	0	50	35	20	2	41	1.68
489172--489342	87	2.0	87	91	0	279	30	19	15	33	1.94
489755--489802	26	1.9	24	83	8	60	37	4	0	58	1.18
494378--494766	171	2.3	170	89	3	584	33	12	13	40	1.83
497587--497622	17	2.0	19	89	10	58	41	0	58	0	0.98
501532--501599	6	11.3	6	100	0	136	50	16	0	33	1.45
505567--505597	12	2.6	12	94	0	53	25	3	35	35	1.72
510122--510179	15	3.7	15	72	6	53	41	17	13	27	1.87
510321--510350	16	1.9	15	93	6	51	36	10	13	40	1.78
510406--510449	18	2.6	17	82	10	54	43	25	9	22	1.82
514721--514750	2	15.0	2	100	0	60	50	0	0	50	1.00
515816--515930	59	1.9	60	85	1	160	35	18	10	35	1.85
516080--516118	18	2.2	18	86	9	53	12	7	12	66	1.43
519636--519711	31	2.5	31	82	4	82	40	1	7	50	1.40
520120--520158	3	13.0	3	100	0	78	33	0	0	66	0.92
522555--522608	28	2.0	27	85	3	72	50	3	16	29	1.63
524908--525040	40	3.4	39	79	9	137	33	22	22	21	1.97
524923--525041	40	3.0	38	79	8	139	36	24	20	19	1.95
525096--525293	82	2.4	82	87	3	265	20	21	26	30	1.98
525096--525293	41	4.8	41	83	4	238	20	21	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539900--539957	20	2.9	19	78	14	64	60	1	1	36	1.17
540275--540332	22	2.6	22	81	7	64	41	17	5	36	1.72
544724--544772	8	6.6	8	77	17	61	44	24	0	30	1.54
544733--544774	20	2.1	20	95	0	75	42	26	0	30	1.55
545639--545709	24	2.9	25	77	8	74	36	19	25	18	1.94
545639--545686	25	2.0	24	87	4	69	37	18	25	18	1.94
554985--555085	35	2.9	34	79	5	114	24	10	20	43	1.84
559742--559798	9	6.3	9	89	0	60	43	0	0	56	0.99
559769--559798	3	10.0	3	100	0	60	33	0	0	66	0.92
560030--560081	24	2.2	24	92	0	86	51	28	7	11	1.65
560036--560095	24	2.5	24	88	0	84	53	26	8	11	1.65
560926--560979	24	2.2	24	86	0	72	48	29	9	12	1.73
562034--562080	3	16.3	3	91	8	80	34	0	0	65	0.93
562079--562127	3	16.3	3	100	0	98	0	0	32	67	0.91
562435--562481	3	16.3	3	91	8	80	34	0	0	65	0.93
562480--562514	3	11.7	3	100	0	70	0	0	31	68	0.90
563551--563704	76	2.0	77	97	1	292	42	11	25	19	1.85
591129--591190	20	3.3	20	65	17	60	30	14	3	51	1.58
591122--591197	36	2.1	36	100	0	152	38	13	2	46	1.57
591251--591294	15	3.1	15	75	18	58	9	25	11	54	1.65
591977--592008	15	2.1	15	94	0	55	18	3	12	65	1.38
594337--594423	23	3.7	23	77	10	88	31	13	16	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595100--595220	60	2.0	60	96	0	224	47	7	5	38	1.56
595781--596491	335	2.1	334	92	0	1181	33	20	10	34	1.88
596205--597424	285	4.3	285	94	1	2147	34	17	11	36	1.86
596205--597424	574	2.1	569	95	0	2163	34	17	11	36	1.86
597589--598161	285	2.0	285	94	0	1011	34	18	12	35	1.88
601359--601404	4	11.8	4	86	4	67	26	4	0	69	1.07
601361--601407	15	3.1	15	85	14	69	25	6	0	68	1.13
607827--607890	31	2.1	31	88	5	96	57	9	3	29	1.45
607827--607890	30	2.1	29	85	5	92	57	9	3	29	1.45
615665--615710	4	11.5	4	100	0	92	50	23	0	26	1.50
616220--616292	19	3.8	19	74	25	66	28	6	4	60	1.41
616220--616321	20	5.4	19	72	23	65	29	6	2	60	1.37
616865--616897	2	16.5	2	87	12	50	48	3	0	48	1.17
616984--617018	3	11.7	3	93	0	61	34	34	0	31	1.58
621333--621420	42	2.0	44	85	8	119	28	1	23	46	1.60
621333--621398	21	3.1	21	68	0	60	28	0	22	48	1.51
621455--621537	34	2.5	33	81	14	98	43	1	14	40	1.53
621539--622031	126	3.9	126	87	3	699	36	17	17	27	1.93
621540--622031	250	2.0	250	88	3	740	36	17	17	27	1.93
624464--624494	9	3.4	9	90	0	53	25	12	22	38	1.90
624573--624597	9	2.8	9	100	0	50	44	12	12	32	1.78
624649--624705	29	1.9	30	96	3	107	19	42	0	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626605--626639	18	1.9	18	88	0	52	34	8	28	28	1.87
627225--627249	7	3.6	7	100	0	50	60	12	0	28	1.32
651344--651398	28	1.9	29	85	3	76	23	20	3	52	1.62
651501--651536	9	3.9	9	85	7	54	66	2	0	30	1.06
651508--651583	29	2.4	33	82	14	97	59	1	0	39	1.06
651519--651584	31	2.2	29	89	5	96	57	0	0	42	0.98
653878--653904	2	13.5	2	100	0	54	51	0	0	48	1.00
656118--656152	18	1.9	18	88	0	52	22	20	17	40	1.92
659380--659527	76	1.9	76	82	6	183	42	15	12	29	1.83
659772--659818	23	2.0	23	91	0	76	46	14	10	27	1.78
666547--666740	86	2.2	87	84	10	254	37	21	6	35	1.78
667101--667274	87	1.9	89	87	6	253	37	8	20	33	1.83
672022--672099	39	2.0	39	97	0	147	28	34	10	26	1.89
675984--676023	19	2.1	19	85	0	53	50	2	0	47	1.14
676890--676933	19	2.2	20	84	4	54	47	4	4	43	1.44
681884--681922	15	2.8	13	82	17	51	51	2	0	46	1.14
682401--682438	16	2.5	15	86	4	58	57	7	13	21	1.60
684217--684262	14	3.1	14	79	14	56	39	0	0	60	0.97

Tables:   1   2

The End!