genome.fa.s1482.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold246
Parameters: 2 7 7 80 10 50 1000
Length:  866086

Tables:   1   2   3   4   

This is table  2  of  4  ( 414 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208361--208404	21	2.0	21	82	4	52	36	15	22	25	1.94
210872--210903	16	2.1	15	94	5	55	31	3	18	46	1.65
211289--211437	46	3.3	46	84	11	211	49	12	6	31	1.65
227725--227759	16	2.2	16	89	0	52	60	2	8	28	1.41
228355--228451	19	4.8	19	73	10	59	38	12	8	41	1.73
228389--228451	21	3.1	21	75	9	58	36	11	9	42	1.73
228800--228829	15	2.0	15	93	0	51	33	10	6	50	1.62
229091--229129	19	2.1	19	90	0	60	58	15	0	25	1.37
231159--231253	45	2.1	44	92	5	156	57	13	16	11	1.64
231277--231325	25	1.9	26	91	4	82	59	12	16	12	1.62
233255--233284	15	2.0	15	93	0	51	33	10	6	50	1.62
235208--235239	16	2.0	16	93	0	55	12	9	34	43	1.75
235586--235634	15	3.3	15	72	16	57	63	10	0	26	1.26
237418--237637	111	2.0	112	89	0	343	31	12	14	41	1.83
239824--239859	19	1.9	19	88	5	56	33	5	2	58	1.36
241933--242998	533	2.0	533	94	0	1889	31	18	9	40	1.83
248442--248647	54	3.8	54	100	0	412	31	23	17	27	1.97
251550--251581	14	2.4	13	94	5	55	34	12	18	34	1.89
256687--256994	151	2.0	152	89	1	476	27	17	29	25	1.97
263230--263338	54	2.0	54	96	0	200	21	21	22	35	1.96
278461--278488	12	2.3	12	100	0	56	21	28	0	50	1.49
278459--278551	22	4.2	21	73	21	75	22	30	1	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278470--278551	11	7.4	11	82	6	87	21	31	1	45	1.60
280069--280108	21	1.9	21	84	0	53	37	7	2	52	1.43
282514--282925	126	3.3	125	90	2	637	26	22	19	31	1.98
282962--283187	95	2.4	89	85	7	274	37	18	4	39	1.72
283825--283968	71	2.0	72	94	2	254	45	8	12	33	1.72
284036--284096	24	2.5	24	89	0	86	19	34	0	45	1.51
284929--284968	18	2.1	20	86	9	57	40	2	0	57	1.12
292026--292075	19	2.6	19	81	6	57	48	2	6	44	1.39
293019--293137	10	12.8	10	65	21	55	55	3	2	38	1.30
293050--293125	25	2.9	26	81	13	77	59	1	3	35	1.24
293047--293163	62	1.9	62	82	3	146	56	0	3	39	1.22
296519--296698	51	3.5	51	78	3	159	23	16	28	31	1.96
300023--300047	10	2.5	10	100	0	50	68	0	8	24	1.16
312229--312270	19	2.2	19	83	8	50	69	9	0	21	1.17
313981--314167	60	3.2	60	89	3	290	39	18	20	20	1.93
330062--330091	10	2.9	10	95	5	51	46	0	0	53	1.00
330171--330243	37	2.0	37	89	5	112	30	6	2	60	1.37
330461--330533	31	2.4	31	86	4	94	32	6	4	56	1.45
330448--330581	10	13.2	10	65	16	53	30	4	3	61	1.33
338290--338342	12	4.4	12	85	0	61	26	11	15	47	1.79
338294--338331	6	6.3	6	93	0	58	26	5	18	50	1.68
338290--338342	18	2.9	18	85	0	70	26	11	15	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341294--341336	20	2.2	19	84	8	59	13	4	11	69	1.33
344874--344962	22	4.0	22	77	8	92	11	44	21	22	1.83
352265--352304	20	1.9	20	85	10	53	62	5	0	32	1.17
352699--352858	79	2.0	80	93	1	277	28	22	10	38	1.86
354126--354493	68	5.4	67	66	19	224	42	4	5	47	1.44
354196--354311	61	1.9	58	86	11	164	43	5	5	46	1.48
354430--354546	56	2.1	56	100	0	234	44	1	5	48	1.35
358626--358670	18	2.5	18	85	7	56	33	24	11	31	1.90
359163--359230	30	2.2	31	81	5	84	64	0	1	33	1.02
360381--360410	12	2.5	12	100	0	60	53	0	6	40	1.27
380781--380960	89	2.0	90	98	1	353	44	8	5	41	1.59
381310--381352	16	2.9	14	74	12	50	67	6	0	25	1.15
381567--381636	19	3.7	19	78	3	88	38	8	0	52	1.32
381572--381642	37	1.9	37	97	0	133	40	9	0	49	1.36
381854--381892	19	2.1	19	85	4	53	35	7	0	56	1.28
381859--381901	18	2.3	19	84	4	52	39	11	0	48	1.40
381898--381956	19	3.2	19	80	4	84	49	0	11	38	1.40
382117--382157	19	2.1	19	86	4	55	53	0	9	36	1.34
386382--386425	9	4.7	9	86	8	61	75	0	0	25	0.81
386382--386436	10	5.4	11	81	16	57	70	1	0	27	0.97
386382--386426	19	2.4	19	84	0	63	75	0	0	24	0.80
395000--395398	45	8.9	45	87	0	555	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399871--399905	16	2.2	16	94	0	61	45	20	17	17	1.85
404885--404929	21	2.1	21	100	0	90	22	13	24	40	1.90
406085--406173	13	6.8	13	89	0	133	39	24	11	24	1.88
406085--406173	39	2.3	39	96	0	169	39	24	11	24	1.88
407731--407755	8	3.1	8	100	0	50	52	0	24	24	1.48
413058--413305	42	5.9	42	90	2	374	35	21	21	21	1.96
413058--413305	126	2.0	127	91	4	412	35	21	21	21	1.96
413706--413755	21	2.4	21	82	0	64	2	42	18	38	1.61
416955--417010	3	18.7	3	88	0	85	62	0	0	37	0.95
416955--417010	18	3.1	18	94	0	94	62	0	0	37	0.95
418281--418323	20	2.2	20	88	8	63	39	2	2	55	1.25
418245--418304	26	2.3	26	97	2	113	33	3	0	63	1.11
418245--418313	26	2.8	26	89	6	81	34	2	1	60	1.20
418268--418321	24	2.2	24	77	6	56	38	1	1	57	1.20
435259--435316	27	2.2	26	84	12	73	46	6	0	46	1.29
439521--439575	28	2.0	28	88	0	83	45	14	7	32	1.72
439642--439701	9	6.7	9	88	0	84	41	23	10	25	1.85
439642--439701	18	3.3	18	85	0	93	41	23	10	25	1.85
439642--439701	27	2.2	27	93	0	102	41	23	10	25	1.85
439788--439831	18	2.4	18	85	7	54	15	2	40	40	1.60
442294--442353	24	2.6	23	80	12	61	36	0	20	43	1.52
446647--446713	34	1.9	35	87	3	100	31	8	14	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448577--448661	40	2.1	41	93	2	145	61	17	15	5	1.53
459712--459777	31	2.1	33	83	11	84	40	7	9	42	1.65
461707--461832	63	2.1	59	84	11	157	57	11	11	20	1.64
463718--463760	18	2.4	18	88	7	61	46	0	0	53	1.00
464054--464095	20	2.1	20	86	0	57	42	7	2	47	1.43
471295--471356	24	2.6	23	76	5	70	29	56	1	12	1.46
471468--471527	30	2.0	30	83	0	75	16	50	5	28	1.66
471475--471764	78	3.7	78	93	1	458	18	51	4	25	1.65
471526--471587	30	2.1	30	84	6	81	16	53	6	24	1.66
471679--471784	30	3.5	28	74	7	77	23	50	2	22	1.62
478491--478533	12	3.7	12	78	6	52	16	2	30	51	1.57
478491--478535	23	2.0	23	90	0	72	15	2	28	53	1.54
479908--479968	20	3.0	20	72	13	54	26	1	3	68	1.14
483150--483190	18	2.3	18	87	8	57	60	2	0	36	1.10
488120--488154	6	5.8	6	93	0	52	20	37	11	31	1.88
488140--488215	21	3.6	21	81	0	89	25	44	7	22	1.79
488134--488479	27	12.1	27	69	17	157	25	44	8	21	1.80
488158--488211	15	3.8	15	71	14	60	27	44	5	22	1.75
488173--488330	33	5.0	33	78	10	170	25	46	8	18	1.78
488373--488478	33	3.4	33	70	15	98	25	45	8	20	1.79
488433--488472	21	1.9	21	84	0	53	25	45	7	22	1.78
490205--490260	29	1.9	29	88	0	85	44	7	14	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495786--495861	38	2.0	38	86	0	107	30	27	15	26	1.96
495770--495900	43	3.2	43	75	14	141	31	27	16	25	1.96
496673--496701	13	2.1	14	93	6	51	55	6	0	37	1.27
497775--497831	29	2.0	28	90	6	89	38	0	5	56	1.22
499154--499197	9	5.1	9	83	10	65	56	13	0	29	1.38
499163--499200	16	2.4	16	90	0	58	55	13	0	31	1.38
499270--499311	16	2.6	16	92	0	66	42	7	2	47	1.43
501917--501942	12	2.2	12	100	0	52	30	26	7	34	1.85
503688--503840	9	17.6	9	72	14	99	32	1	18	46	1.61
503652--503868	61	3.7	59	81	12	288	34	1	17	46	1.59

Tables:   1   2   3   4