genome.fa.s1482.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold246
Parameters: 2 7 7 80 10 50 1000
Length:  866086

Tables:   1   2   3   4   

This is table  3  of  4  ( 414 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503650--503840	18	11.0	18	69	14	100	33	2	18	46	1.61
503761--503869	51	2.1	52	96	1	202	32	0	20	46	1.57
504097--504147	24	2.1	25	82	10	61	43	0	3	52	1.19
505695--505770	23	3.3	23	75	14	75	42	1	35	21	1.61
505463--505789	164	2.0	165	89	1	496	34	9	37	18	1.84
506258--506531	7	38.7	7	68	7	88	44	32	1	21	1.61
506337--506410	23	3.3	23	78	12	75	33	39	2	24	1.70
506411--506490	27	2.9	27	72	22	69	48	30	1	20	1.57
507163--507311	40	3.7	41	84	8	191	23	22	21	32	1.98
509073--509114	21	2.0	21	86	9	59	38	4	2	54	1.34
509640--509693	28	1.9	28	85	7	74	25	7	3	62	1.38
509640--509693	29	1.9	27	82	14	65	25	7	3	62	1.38
514355--514390	17	2.2	17	90	5	56	8	5	36	50	1.56
516598--516639	20	2.1	20	100	0	84	42	19	4	33	1.72
516741--516809	28	2.4	28	85	9	86	53	1	4	40	1.30
518935--518968	3	11.7	3	87	6	52	35	0	0	64	0.94
518935--518973	14	2.9	14	88	7	55	33	0	2	64	1.08
518988--519018	16	1.9	16	93	0	53	48	3	0	48	1.17
524905--525026	56	2.1	58	88	5	178	45	17	13	22	1.84
524926--525037	58	2.0	56	89	3	170	46	17	13	22	1.83
529312--529367	14	3.8	14	82	13	76	33	5	21	39	1.76
534802--534866	25	2.6	25	69	16	62	58	3	1	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534817--534871	24	2.3	24	87	12	78	58	3	1	36	1.26
536567--536608	22	1.9	22	95	0	75	26	0	11	61	1.30
536561--536607	11	4.4	11	81	2	60	27	0	10	61	1.29
542307--542343	14	2.8	13	88	8	56	48	8	10	32	1.67
542567--542767	34	5.9	34	80	2	159	20	21	16	41	1.90
542580--542779	69	2.9	69	83	2	231	20	21	17	41	1.91
542581--542769	103	1.8	103	94	0	333	20	21	17	40	1.91
542620--542779	34	4.7	34	86	1	203	21	23	16	38	1.93
545668--545710	21	2.0	23	81	9	54	32	13	9	44	1.76
553553--553615	26	2.4	25	77	12	65	55	1	1	41	1.19
563141--563200	26	2.4	24	75	8	57	28	21	20	30	1.98
568173--568227	25	2.2	25	90	0	83	60	16	9	14	1.59
569529--569590	30	2.1	30	96	0	115	35	6	9	48	1.62
570218--570282	5	12.8	5	74	19	55	75	6	18	0	1.00
570219--570281	9	6.3	9	75	15	54	74	6	19	0	1.02
571165--571292	40	3.4	37	78	11	136	25	18	25	30	1.98
575843--575880	15	2.5	15	91	0	58	26	34	10	28	1.90
581019--581050	15	2.3	15	89	10	50	15	0	21	62	1.32
591282--591312	10	3.1	10	90	0	53	19	3	0	77	0.90
594652--594697	21	2.2	21	84	0	56	21	36	32	8	1.84
597196--597235	13	2.8	13	85	14	53	40	0	0	60	0.97
597197--597238	8	5.6	8	88	8	54	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600860--600944	41	2.1	41	97	0	161	45	5	2	45	1.40
600864--600931	23	3.2	23	62	33	60	47	7	2	42	1.46
620589--620697	55	2.0	55	96	0	200	17	12	19	50	1.78
638716--638748	18	1.9	17	88	11	50	48	0	3	48	1.17
638894--638928	18	2.0	17	88	5	52	77	2	17	2	1.02
650287--650485	99	2.0	100	97	1	373	37	15	7	39	1.75
650884--650917	14	2.5	14	90	4	52	52	17	2	26	1.58
651166--651213	21	2.3	21	82	7	62	6	18	39	35	1.76
651454--651496	18	2.4	18	88	0	59	44	9	27	18	1.80
653342--653395	11	5.1	10	83	16	65	46	1	29	22	1.62
653342--653395	22	2.5	22	85	14	85	46	1	29	22	1.62
656599--656733	70	1.9	70	100	0	270	35	7	13	43	1.72
657518--657554	2	18.5	2	88	0	56	48	2	0	48	1.15
657970--658002	2	16.5	2	100	0	66	48	0	0	51	1.00
658274--658308	2	17.5	2	100	0	70	48	0	0	51	1.00
664872--664911	21	2.0	19	85	9	53	27	5	0	67	1.11
664934--664963	14	2.1	14	93	0	51	16	6	13	63	1.50
664998--665057	30	2.0	30	96	0	111	28	3	11	56	1.51
688830--688890	31	2.0	31	83	6	79	44	13	3	39	1.60
694090--694148	28	2.1	29	87	6	86	15	3	13	67	1.35
695452--695489	19	2.0	19	90	10	60	31	2	0	65	1.06
698030--698336	45	6.8	44	81	5	294	42	27	16	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698030--698336	90	3.4	90	84	2	384	42	27	16	13	1.86
698031--698335	135	2.2	133	81	6	344	42	27	16	13	1.85
701902--701954	10	5.2	10	78	17	56	0	30	3	66	1.10
702516--702575	21	2.8	22	75	14	79	25	25	30	20	1.99
703712--703878	44	3.7	44	78	10	183	29	19	19	31	1.96
703797--703911	50	2.3	50	80	3	124	30	26	17	26	1.97
715558--715587	14	2.1	15	93	6	53	66	0	6	26	1.16
715683--715802	4	29.5	4	71	14	68	67	0	8	23	1.23
715680--715785	31	3.4	30	81	10	117	68	0	7	23	1.14
715729--715817	45	2.0	46	84	6	119	68	1	6	23	1.20
717494--717559	29	2.2	30	84	7	82	57	0	1	40	1.08
721942--721973	15	2.1	15	94	0	55	68	9	6	15	1.36
724818--724848	9	3.4	9	95	0	53	41	22	9	25	1.84
724856--724918	17	3.5	17	69	12	54	49	12	3	34	1.57
724847--724921	37	2.0	37	94	0	132	45	14	4	36	1.64
725053--725126	38	1.9	39	88	2	114	20	2	22	54	1.57
725111--725167	13	4.7	13	79	16	77	14	0	45	40	1.44
725112--725179	18	3.8	18	74	3	66	16	0	42	41	1.48
725112--725157	22	2.0	23	91	4	76	10	0	47	41	1.38
726100--726268	54	3.2	53	88	2	223	42	23	15	18	1.88
726100--726268	27	6.3	27	81	6	200	42	23	15	18	1.88
726149--726289	27	5.2	27	77	10	101	41	23	17	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726310--726420	24	4.6	24	79	8	109	24	6	25	44	1.77
726312--726408	48	2.0	48	86	7	135	24	6	24	44	1.77
726484--726548	27	2.4	27	80	14	73	21	24	21	32	1.98
726595--726729	32	4.3	32	80	5	123	21	16	22	40	1.91
726721--726767	22	2.1	22	84	0	58	19	17	17	46	1.84
731383--731867	241	2.0	235	93	5	825	47	7	16	28	1.73
731678--731707	10	3.0	10	95	0	51	86	0	13	0	0.57
731675--731706	15	2.2	15	94	5	57	90	0	9	0	0.45
733037--733417	45	8.5	45	81	3	453	41	29	18	11	1.85
733032--733417	90	4.3	90	96	0	682	41	29	18	11	1.85
734003--734036	17	2.0	17	94	0	59	32	11	17	38	1.86
735555--735606	21	2.4	22	81	12	63	44	0	3	51	1.19
736038--736079	20	2.1	20	86	0	57	47	0	7	45	1.30
742070--742108	19	2.1	18	85	4	51	43	10	7	38	1.67
743405--743532	64	2.0	64	96	0	238	46	15	11	26	1.80
744242--744282	20	2.0	20	100	0	82	19	19	24	36	1.95
744649--745002	45	7.9	45	78	7	369	44	28	15	11	1.80
744628--745017	90	4.3	90	87	1	505	43	29	15	11	1.82
744621--745017	180	2.2	180	87	0	562	43	28	15	11	1.82
748459--749140	340	2.0	341	99	0	1357	34	13	14	38	1.84
752569--752712	74	1.9	74	88	2	218	29	19	17	33	1.95
753854--754136	45	6.3	45	82	5	331	43	28	16	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753854--754237	90	4.1	90	83	8	398	42	29	15	12	1.84
753841--754102	135	1.9	135	90	3	420	41	28	17	12	1.86
753849--754136	135	2.1	134	86	5	393	43	28	15	12	1.84
754105--754396	57	5.4	56	65	25	200	40	33	11	14	1.82
754150--754307	48	3.1	48	62	26	108	41	32	12	13	1.83
754317--754411	27	3.4	26	74	14	75	42	36	7	13	1.73
754317--754439	57	2.2	57	81	0	138	41	37	8	13	1.73
754059--754381	105	3.1	105	95	1	589	41	32	12	13	1.82
757854--757879	12	2.2	12	100	0	52	23	7	7	61	1.49
758288--758437	70	2.2	70	79	6	178	46	8	13	31	1.73

Tables:   1   2   3   4