genome.fa.s1772.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold302
Parameters: 2 7 7 80 10 50 1000
Length:  592491

Tables:   1   2   3   

This is table  2  of  3  ( 255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169412--169494	26	3.1	26	80	16	105	34	30	15	19	1.93
169886--169939	22	2.5	22	87	3	74	38	24	16	20	1.92
182520--182565	18	2.6	18	92	0	74	28	4	2	65	1.23
182540--182585	23	2.0	23	82	0	56	23	2	6	67	1.25
186514--186580	6	11.3	6	85	6	59	17	1	11	68	1.27
186508--186596	6	14.5	6	79	9	54	15	2	10	71	1.22
188170--188216	23	2.1	23	84	4	60	17	31	21	29	1.96
188180--188235	25	2.3	23	78	6	58	17	28	23	30	1.97
191492--191580	30	3.0	30	89	0	142	19	34	31	14	1.92
203155--203191	13	2.7	14	87	8	58	13	0	35	51	1.41
210861--210885	2	12.5	2	100	0	50	48	0	0	52	1.00
212823--212874	23	2.2	25	89	6	81	71	3	13	11	1.28
213206--213265	19	3.0	20	76	9	61	28	5	1	65	1.23
213345--213577	92	2.5	90	79	10	274	30	9	21	38	1.85
216587--216642	27	2.1	26	83	9	69	28	26	10	33	1.90
218591--218722	34	3.8	35	71	9	101	25	4	34	36	1.76
220748--220988	129	2.0	123	88	11	363	52	1	11	34	1.46
224214--224256	12	3.6	12	93	0	77	32	32	25	9	1.88
224214--224262	24	2.0	24	96	0	89	30	28	28	12	1.93
230797--230835	19	2.1	19	85	9	53	38	7	5	48	1.54
233392--233426	13	2.7	13	86	0	52	45	0	2	51	1.16
235353--235469	43	2.7	43	84	3	139	32	28	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237992--238050	25	2.4	25	82	5	75	49	15	5	30	1.66
247313--247337	9	2.8	9	100	0	50	48	24	0	28	1.52
251459--251521	27	2.3	27	86	0	90	39	15	22	22	1.92
251459--251536	27	2.9	27	80	3	68	35	17	21	24	1.95
262298--262329	15	2.1	15	94	0	55	15	6	9	68	1.36
265805--265859	5	11.0	5	92	0	92	40	23	0	36	1.55
267130--267473	37	9.2	37	79	8	329	30	14	16	38	1.89
267116--267473	75	4.8	75	87	0	484	30	15	16	37	1.89
271198--271293	37	2.6	39	76	18	98	41	4	4	50	1.41
271272--271519	62	3.9	59	76	14	244	40	4	4	50	1.41
271346--271521	32	5.4	32	65	20	87	40	5	3	50	1.41
271189--271531	131	2.6	131	95	1	602	40	4	4	50	1.43
274863--274963	45	2.2	45	89	0	148	34	21	16	26	1.95
275540--275596	25	2.2	25	81	9	62	63	3	3	29	1.28
289333--289426	42	2.3	40	80	14	104	15	30	29	23	1.96
297685--297712	6	4.7	6	100	0	56	14	14	17	53	1.73
302022--302076	21	2.6	21	80	11	58	43	0	1	54	1.10
302237--302315	29	2.6	30	84	6	97	46	11	6	35	1.65
302355--302398	20	2.1	21	83	4	54	40	6	2	50	1.42
304459--304483	11	2.3	11	100	0	50	32	0	40	28	1.57
314920--314947	14	2.0	14	100	0	56	35	7	14	42	1.73
316803--316834	15	2.1	15	100	0	64	15	12	12	59	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323204--323241	10	3.6	11	86	6	53	0	18	0	81	0.69
323205--323247	14	3.1	13	83	12	50	0	18	0	81	0.69
325332--325361	12	2.5	12	94	0	51	36	10	0	53	1.35
330415--330447	12	2.8	12	95	0	57	36	9	0	54	1.32
330859--330883	6	4.2	6	100	0	50	48	0	0	52	1.00
331134--331211	30	2.6	29	81	4	75	39	10	17	32	1.84
332623--332657	18	1.9	18	88	0	52	5	48	0	45	1.26
338061--338166	34	3.2	33	82	5	133	33	0	15	50	1.44
339856--339935	40	2.0	40	95	0	142	40	8	16	35	1.79
340097--340614	126	4.2	125	86	5	665	38	17	16	27	1.91
340780--340841	28	2.2	28	97	0	115	35	16	16	32	1.91
343701--343757	25	2.3	23	78	18	62	52	5	0	42	1.24
344138--344174	18	2.1	18	89	0	56	40	8	24	27	1.83
345918--345986	30	2.3	30	87	5	104	39	1	26	33	1.65
347025--347100	38	2.0	38	97	0	143	26	7	9	56	1.58
347037--347098	20	3.2	20	65	9	56	29	6	11	53	1.61
370535--370562	14	2.0	14	100	0	56	64	7	7	21	1.43
374291--374336	24	2.0	24	91	4	76	32	0	15	52	1.43
376179--376226	17	2.8	17	93	0	78	60	6	14	18	1.55
382705--382781	38	2.0	38	89	0	118	25	12	10	50	1.72
384706--384742	17	2.1	18	95	5	67	10	13	24	51	1.73
395548--395770	77	2.9	76	80	11	247	15	16	16	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408086--408111	7	3.7	7	100	0	52	15	0	0	84	0.62
409229--409288	30	2.0	30	96	0	111	43	5	6	45	1.52
409330--409391	28	2.1	27	82	11	70	29	12	8	50	1.69
415750--415792	21	2.1	21	86	4	61	39	20	20	18	1.93
416226--416370	71	2.0	71	98	0	281	40	27	7	24	1.82
416627--416740	56	2.0	56	98	0	219	57	4	22	14	1.55
418903--418965	16	3.9	16	77	4	65	42	4	23	28	1.74
418906--418974	16	4.3	16	73	14	52	44	4	20	30	1.70
421147--421339	96	2.0	97	97	2	370	35	15	24	24	1.94
421375--421400	3	8.7	3	100	0	52	69	0	0	30	0.89
422985--423027	18	2.4	18	80	7	52	51	2	2	44	1.27
424980--425006	3	9.0	3	100	0	54	66	0	0	33	0.92
427584--427628	6	7.2	6	85	9	63	28	0	17	53	1.44
427928--427973	21	2.2	21	92	0	74	0	13	21	65	1.26
427923--427973	15	3.5	15	86	2	59	0	13	19	66	1.24
427928--427980	21	2.5	20	85	11	70	0	13	22	64	1.28
429063--429115	25	2.1	25	96	0	97	47	9	3	39	1.54
431993--432040	21	2.3	21	92	0	78	14	25	18	41	1.88
442340--442444	42	2.5	43	81	4	124	29	25	16	28	1.97
443427--443457	15	2.1	15	100	0	62	41	12	12	32	1.81
454693--454733	9	4.6	9	93	0	73	14	0	7	78	0.96
454784--454835	23	2.3	23	90	6	79	34	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454784--454899	59	2.0	59	92	0	196	29	14	11	44	1.80
454840--454894	23	2.4	23	87	6	76	29	14	14	41	1.85
459227--459261	17	2.1	17	89	10	54	34	8	8	48	1.64
459367--459392	8	3.2	8	100	0	52	50	0	0	50	1.00
459011--459476	232	2.0	232	98	0	898	45	5	12	36	1.65
460099--460123	13	1.9	13	100	0	50	24	16	8	52	1.70
464579--464603	13	1.9	13	100	0	50	24	16	8	52	1.70
470513--470605	46	2.0	46	100	0	186	54	12	10	21	1.68
471289--471342	22	2.5	22	78	6	56	51	1	1	44	1.22
471402--471460	29	2.1	28	80	3	64	38	3	1	55	1.26
475724--475786	18	3.2	20	80	14	71	20	6	0	73	1.05
475731--475787	6	9.2	6	80	14	62	21	3	0	75	0.95
482305--482491	48	3.9	48	100	0	374	47	10	9	32	1.71
505835--505860	4	6.5	4	100	0	52	76	0	0	23	0.78
507329--507426	7	14.0	7	76	4	81	28	31	1	38	1.64
511718--511858	42	3.4	41	81	3	147	43	15	24	16	1.86
517873--517920	20	2.3	21	89	3	71	8	43	41	6	1.60
518391--518419	11	2.5	12	94	5	51	37	0	3	58	1.15
519877--519946	21	3.3	21	70	4	68	21	22	18	37	1.94
519889--519957	22	3.2	21	70	4	66	23	20	15	40	1.91
524896--524924	14	2.1	14	93	6	51	48	13	6	31	1.69
537070--537096	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539434--539478	18	2.5	18	86	13	58	60	8	4	26	1.46
539528--539583	20	2.7	21	83	5	69	71	8	8	10	1.31
539930--539995	31	2.2	31	78	5	73	40	9	9	40	1.68
558875--558927	18	2.9	18	82	2	70	52	1	0	45	1.11
564436--564750	41	7.7	41	76	8	225	22	19	27	30	1.98
564430--564750	82	3.9	81	80	6	308	21	19	28	30	1.98
565224--565268	21	2.1	21	83	0	54	22	2	42	33	1.66
565385--565421	15	2.5	15	90	0	56	24	0	37	37	1.56
565390--565421	7	4.2	8	84	15	50	21	0	40	37	1.54
565515--565554	21	1.9	21	85	10	55	27	0	30	42	1.56

Tables:   1   2   3