genome.fa.s1774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold649
Parameters: 2 7 7 80 10 50 1000
Length:  52728

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264--460	88	2.2	88	90	1	297	33	19	22	23	1.97
1--372	132	2.8	132	85	5	511	33	18	22	25	1.97
132--592	220	2.1	220	89	1	701	32	19	23	25	1.98
352--2068	132	13.0	132	88	1	2391	32	18	23	26	1.97
439--780	44	7.8	43	65	18	159	30	18	27	23	1.98
1--724	352	2.1	352	89	1	1112	32	19	23	25	1.98
352--2068	791	2.2	791	93	0	2975	32	18	23	26	1.97
2868--3159	132	2.2	132	90	1	460	31	18	22	27	1.97
3007--3291	88	3.2	87	70	15	278	31	17	24	26	1.97
3095--3203	44	2.5	44	96	0	200	27	17	29	25	1.97
2969--3332	176	2.1	176	95	0	656	30	16	25	27	1.97
2868--3479	308	2.0	308	87	3	874	30	17	24	27	1.97
3142--4452	132	9.9	132	93	1	1950	32	17	23	27	1.96
4239--4711	220	2.2	220	86	1	662	31	17	23	27	1.97
4371--4579	88	2.4	88	83	0	265	33	17	22	26	1.96
4107--4804	352	2.0	352	86	1	979	31	17	23	27	1.97
4683--4875	44	4.4	44	67	14	119	31	18	25	25	1.97
5214--5591	176	2.1	176	90	0	587	32	17	23	26	1.96
5691--6151	220	2.1	220	86	0	643	31	19	22	26	1.98
5823--6019	88	2.2	88	88	0	286	32	20	22	24	1.98
3975--6415	484	5.0	485	74	8	2183	32	18	22	26	1.97
5383--6545	616	1.9	616	88	2	1748	30	18	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5559--6283	352	2.1	352	86	1	1024	31	18	23	26	1.98
4459--7525	132	23.2	132	84	4	2655	31	18	22	27	1.97
7843--8668	44	18.8	45	64	15	183	31	17	24	26	1.97
7777--8524	263	2.8	264	89	2	1144	31	18	24	26	1.97
7757--8524	395	1.9	396	91	1	1245	31	18	23	26	1.97
8420--8626	88	2.4	88	89	0	315	32	16	24	26	1.96
8480--8612	43	3.0	42	64	16	99	32	18	22	26	1.97
7777--8524	132	5.7	132	90	2	1144	31	18	24	26	1.97
8284--8743	220	2.1	220	88	0	679	31	18	24	25	1.97
8152--8876	352	2.1	352	88	2	1055	31	18	24	26	1.97
8021--9008	484	2.0	483	89	1	1507	31	18	24	26	1.97
8504--10458	132	14.8	132	90	1	2727	30	17	23	27	1.97
10352--10560	88	2.4	88	86	0	292	32	18	23	25	1.97
10220--10675	220	2.1	220	88	0	660	31	18	23	26	1.98
10440--13703	132	24.7	132	90	1	4285	31	19	22	27	1.98
51340--51943	132	4.7	132	87	5	803	31	18	23	26	1.97
51745--51961	118	1.8	118	86	0	317	31	19	21	27	1.97
51862--52031	88	1.9	88	87	2	252	33	19	20	26	1.96
51929--52342	132	3.1	132	81	3	476	30	19	22	26	1.98
52260--52432	90	1.9	90	91	0	283	30	19	22	27	1.98
52306--52447	44	3.2	45	70	17	125	30	19	23	27	1.98
51862--52695	354	2.4	354	84	3	1042	31	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52130--52566	222	2.0	222	91	1	716	30	19	22	27	1.98
52339--52728	131	3.0	132	89	4	610	30	18	24	26	1.98
52339--52725	132	2.9	133	89	4	604	30	18	24	26	1.98

Tables:   1

The End!