genome.fa.s1801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold465
Parameters: 2 7 7 80 10 50 1000
Length:  192513

Tables:   1   2   

This is table  1  of  2  ( 140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--207	2	12.5	2	100	0	50	48	0	0	52	1.00
279--574	46	6.4	46	92	4	508	37	17	8	36	1.81
2489--2559	30	2.3	31	82	4	81	53	5	0	40	1.24
2540--2724	94	2.0	93	88	1	271	43	8	6	41	1.61
8194--8232	20	2.0	20	94	0	69	17	10	25	46	1.80
12839--12877	20	2.0	20	94	0	69	17	10	25	46	1.80
15521--15581	25	2.5	24	76	5	59	40	1	3	54	1.27
15821--15903	19	4.3	18	73	19	62	32	0	4	62	1.16
15918--15957	17	2.4	17	86	0	62	30	2	5	62	1.29
23291--23344	21	2.6	21	85	2	74	72	5	3	18	1.20
23668--23695	13	2.2	13	100	0	56	21	28	21	28	1.99
23679--23748	21	3.2	21	74	18	79	15	20	25	38	1.92
24019--24162	34	4.3	33	73	14	116	31	13	13	41	1.83
24228--24395	49	3.4	49	82	0	192	30	19	15	35	1.92
24626--24844	109	2.0	110	98	0	422	29	10	18	41	1.84
25230--25289	30	2.0	31	90	3	95	20	38	0	41	1.52
32276--32841	3	188.7	3	100	0	1132	66	0	0	33	0.92
36978--37010	16	2.1	16	100	0	66	27	12	12	48	1.76
45871--46083	106	2.0	106	99	0	417	50	9	4	34	1.56
48449--48523	17	3.9	19	70	19	57	50	8	6	34	1.58
48451--48486	17	2.2	17	95	5	65	50	11	2	36	1.53
48396--48509	37	3.2	33	74	16	86	43	8	6	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468--48508	22	2.0	20	85	9	55	46	7	4	41	1.53
48533--48717	35	5.2	35	74	11	144	42	9	13	35	1.76
48534--48710	17	9.8	18	70	11	105	44	9	14	32	1.77
48520--48709	73	2.6	72	83	5	213	43	10	15	31	1.79
48520--48710	36	5.3	35	70	15	120	43	9	15	30	1.79
48570--48710	18	7.8	19	70	17	95	44	9	14	31	1.76
49174--49223	5	10.2	5	79	12	59	0	18	2	80	0.82
49323--49364	17	2.3	18	80	12	50	0	21	23	54	1.44
49332--49380	20	2.5	19	77	9	55	0	20	12	67	1.22
49537--49624	6	13.8	6	80	15	70	0	27	0	72	0.85
49572--49624	3	18.3	3	81	14	67	0	33	0	66	0.92
50157--50255	29	3.4	29	75	9	94	44	6	17	32	1.73
50157--50288	59	2.2	59	85	7	171	43	6	16	33	1.75
50174--50285	29	3.9	29	75	9	104	43	7	17	31	1.76
56367--56472	10	10.9	10	69	19	64	33	0	4	62	1.16
56365--56448	29	2.8	31	80	15	104	32	0	4	63	1.15
56368--56469	19	5.4	18	69	17	64	32	0	4	62	1.16
56366--56458	29	3.2	28	83	11	82	32	0	4	63	1.14
57937--59066	376	3.0	376	97	0	2152	40	25	11	22	1.88
60884--60936	18	2.9	17	79	17	54	69	5	3	20	1.25
64036--64093	28	2.1	27	83	3	71	51	12	12	24	1.72
64084--64207	18	6.6	19	72	14	78	44	9	10	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64064--64140	21	3.8	20	71	10	57	41	10	9	38	1.71
64116--64194	36	2.2	36	77	4	88	43	7	11	37	1.69
64337--64385	25	1.9	25	87	4	71	75	8	6	10	1.18
64713--64758	20	2.4	19	86	13	67	0	15	0	84	0.62
64873--64936	25	2.6	23	79	16	65	4	31	39	25	1.76
65074--65169	10	9.2	10	70	21	56	0	20	1	78	0.82
65075--65128	21	2.5	21	87	3	72	0	18	1	79	0.82
65103--65171	31	2.3	31	85	9	90	0	24	0	75	0.81
65074--65172	28	3.8	25	76	20	82	0	22	1	76	0.84
65266--65339	8	9.4	8	75	18	50	1	18	4	75	1.03
65271--65333	16	4.0	16	76	15	69	0	17	4	77	0.93
65862--65923	21	2.9	21	78	7	72	74	4	3	17	1.13
66502--66536	13	2.7	13	90	0	52	45	5	11	37	1.64
73641--73706	7	9.3	7	79	9	71	13	0	40	45	1.44
73709--74034	93	3.4	94	78	11	277	39	3	19	36	1.70
73734--73972	91	2.5	92	80	8	275	39	3	17	38	1.68
73709--74067	102	3.7	99	75	15	293	40	3	18	37	1.68
74061--74481	126	3.3	126	87	4	591	36	16	18	28	1.93
77502--77682	55	3.2	55	74	17	206	44	8	2	44	1.49
77441--77710	116	2.3	116	96	0	495	46	7	3	42	1.50
77827--77888	21	3.0	21	79	9	56	6	19	43	30	1.76
79988--80063	11	6.9	11	81	11	93	42	0	31	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85487--85563	37	2.1	37	97	0	145	11	37	28	22	1.89
86329--86498	81	2.1	82	97	2	326	35	5	8	50	1.57
86567--86597	16	1.9	16	93	0	53	41	6	3	48	1.45
87912--87964	24	2.3	23	84	12	65	47	22	24	5	1.73
88878--88941	22	2.7	24	80	7	69	45	0	0	54	0.99
90528--90618	34	2.7	33	77	13	94	34	14	10	40	1.81
90738--90897	49	3.3	49	78	0	149	30	20	15	34	1.93
94453--94567	44	2.7	41	78	16	110	43	11	21	23	1.85
95240--95277	18	2.1	18	100	0	76	42	5	15	36	1.70
95873--95967	49	1.9	49	95	0	172	40	17	6	35	1.76
96574--96719	78	1.9	77	81	4	177	45	10	4	39	1.57
97434--97472	17	2.3	17	95	0	69	23	20	12	43	1.86
97881--97954	34	2.2	34	97	0	139	21	20	13	44	1.85
101842--101980	70	2.0	70	94	0	242	37	7	23	31	1.83
102028--102054	2	13.5	2	100	0	54	48	0	0	51	1.00
104947--104984	3	12.7	3	100	0	76	65	0	0	34	0.93
108588--109013	212	2.0	213	99	0	845	38	16	10	34	1.84
111070--111133	29	2.2	28	82	15	78	32	0	6	60	1.21
111070--111151	10	8.7	9	74	15	58	32	1	6	59	1.30
111087--111151	19	3.4	18	75	12	51	33	1	7	56	1.37
111071--111170	29	3.5	28	75	16	71	33	1	7	59	1.31
111072--111210	57	2.5	57	75	8	140	32	1	5	60	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121174--121237	29	2.2	28	82	15	78	32	0	6	60	1.21
121174--121255	10	8.7	9	74	15	58	32	1	6	59	1.30
121191--121255	19	3.4	18	75	12	51	33	1	7	56	1.37
121175--121274	29	3.5	28	75	16	71	33	1	7	59	1.31
121176--121314	57	2.5	57	75	8	140	32	1	5	60	1.29
124220--124250	10	3.1	10	90	0	53	77	0	22	0	0.77
124214--124263	20	2.4	21	87	12	77	72	0	24	4	1.02
130460--130508	21	2.2	24	82	10	59	69	2	16	12	1.28
132808--132963	7	21.4	7	66	19	61	38	42	1	16	1.59
132811--132867	30	2.0	28	86	6	78	35	47	1	15	1.56
132818--132942	37	3.4	37	94	2	216	36	44	2	16	1.61
133160--133502	112	3.0	113	89	1	526	25	26	22	25	2.00
133402--133605	72	2.8	73	86	3	304	25	24	23	27	2.00
134571--134630	20	3.0	21	80	4	70	71	5	3	20	1.19
134991--135016	13	2.0	13	100	0	52	30	7	15	46	1.74
136357--136567	107	2.0	108	87	0	307	29	16	18	35	1.93
136583--136876	109	2.7	109	88	3	441	33	19	17	29	1.94
138278--138340	31	2.0	31	81	6	74	71	3	6	19	1.21
139460--139589	29	4.6	29	77	13	119	40	3	18	36	1.69
140664--140739	34	2.2	34	86	4	100	31	13	14	40	1.84
140677--140806	34	3.8	33	75	12	104	30	14	14	40	1.86
140860--141040	49	3.7	49	82	0	202	30	18	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143106--143249	34	4.3	33	74	17	118	30	13	14	41	1.84
143334--143475	49	2.9	49	84	0	185	29	19	15	35	1.92
147117--147323	90	2.3	90	82	4	240	40	13	19	26	1.88
147117--147323	45	4.6	44	78	5	193	40	13	19	26	1.88
152918--153196	139	2.0	140	99	0	551	30	10	5	54	1.55
154084--154132	18	2.7	19	81	9	57	71	4	6	18	1.23
156159--156535	208	1.8	208	86	1	549	28	25	16	29	1.97
168260--168308	18	2.7	19	81	9	57	71	4	6	18	1.23
168895--168947	3	17.7	3	80	7	63	64	3	0	32	1.12
174453--174509	6	8.7	6	81	14	51	73	0	26	0	0.83

Tables:   1   2