genome.fa.s191.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold363
Parameters: 2 7 7 80 10 50 1000
Length:  774241

Tables:   1   2   3   4   

This is table  2  of  4  ( 365 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281808--281871	29	2.1	29	88	5	92	70	0	1	28	0.97
285230--285265	17	2.1	18	94	5	65	36	5	16	41	1.72
296647--296678	16	2.1	16	88	11	50	43	9	12	34	1.75
301723--301748	13	2.0	13	100	0	52	38	7	7	46	1.61
304994--305031	8	4.9	8	96	3	69	39	21	0	39	1.53
308026--308088	28	2.2	28	81	13	76	50	3	0	46	1.17
309356--309479	49	2.5	49	82	2	142	28	14	29	28	1.95
310276--310358	23	3.6	24	85	6	109	67	4	1	26	1.18
310308--310361	22	2.5	22	91	8	85	64	3	0	31	1.11
310942--311406	227	2.0	229	80	4	539	25	20	26	27	1.99
310973--311406	113	3.8	114	80	3	410	25	20	26	27	1.99
310942--311406	114	4.1	113	80	3	468	25	20	26	27	1.99
311659--311726	14	4.6	14	75	10	55	27	0	30	41	1.56
311850--311889	14	2.9	14	88	0	62	20	0	47	32	1.50
311856--311889	7	4.9	7	85	0	50	17	0	50	32	1.47
311870--312120	83	3.0	84	84	7	296	30	2	24	42	1.67
312309--312475	84	2.0	84	87	0	244	28	16	22	32	1.96
312323--312537	84	2.6	84	78	10	201	30	15	22	32	1.95
312753--313002	84	3.0	82	79	9	218	32	16	20	31	1.95
312848--313069	84	2.7	84	85	3	279	27	17	21	33	1.96
314444--314518	35	2.3	33	82	13	84	42	17	1	38	1.58
314481--314547	13	4.8	13	79	13	62	44	14	2	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314459--314521	17	3.6	17	80	4	72	42	15	1	39	1.57
314475--314600	43	3.0	45	72	17	117	44	13	2	39	1.57
314497--314624	26	5.1	26	66	21	69	42	12	2	42	1.55
314467--314628	18	8.5	18	66	18	78	44	12	2	40	1.55
314876--314928	20	2.7	20	100	0	106	54	15	0	30	1.41
314862--314928	12	6.2	12	69	29	53	53	13	0	32	1.40
314916--315179	16	16.4	16	65	24	67	50	18	1	29	1.55
314914--315296	9	44.7	9	67	18	144	48	18	1	31	1.57
314936--315050	25	4.5	26	76	8	101	48	19	1	30	1.59
314906--315142	51	4.6	55	78	14	188	51	17	0	30	1.52
315038--315123	23	3.2	30	67	32	93	52	16	0	31	1.44
315068--315171	7	13.7	7	70	23	61	52	17	0	28	1.51
315035--315137	51	2.0	51	100	0	206	53	15	0	31	1.42
314900--315167	25	10.6	25	66	20	98	50	17	1	30	1.54
315189--315267	25	3.2	25	87	0	95	46	17	2	32	1.62
317168--317208	21	2.0	21	95	0	73	31	19	43	4	1.72
317556--317734	43	4.2	43	83	0	214	26	19	30	23	1.98
318891--318926	16	2.2	17	90	5	56	11	13	5	69	1.34
319841--320002	80	2.0	81	97	1	308	50	16	14	19	1.78
320535--320625	45	2.0	44	89	6	139	34	28	5	31	1.80
320604--320657	16	3.4	16	89	0	81	25	35	3	35	1.74
320730--320785	29	2.0	26	83	16	69	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327791--327838	21	2.3	21	85	0	60	27	10	33	29	1.90
330653--330720	30	2.3	31	80	12	79	67	2	5	23	1.26
330734--330788	28	2.0	28	86	6	78	50	0	5	43	1.25
331059--331106	16	3.0	16	84	0	60	68	10	4	16	1.33
331850--331885	4	8.8	4	87	6	54	75	0	2	22	0.94
331849--331886	17	2.2	17	95	0	67	76	0	2	21	0.91
332722--332891	44	4.0	43	76	5	146	27	20	24	28	1.99
332722--333146	128	3.3	128	86	2	575	27	20	21	31	1.98
332793--333186	128	3.1	127	81	5	465	27	19	21	31	1.97
333180--333361	44	4.2	44	68	12	113	26	24	20	28	1.99
333224--333495	88	3.1	86	69	14	232	29	23	18	28	1.98
333557--333733	89	2.0	89	85	2	239	24	23	24	27	2.00
333535--333753	89	2.5	89	82	3	235	26	24	21	27	2.00
335059--335098	12	3.4	12	82	3	55	0	12	2	85	0.71
335065--335098	7	4.6	7	86	13	50	0	11	2	85	0.71
335065--335099	8	4.5	8	89	3	54	0	11	2	85	0.69
348220--348271	25	2.1	25	85	0	68	32	23	23	21	1.98
348228--348323	24	3.9	25	75	4	79	33	22	27	16	1.96
348279--348430	25	6.2	24	78	12	98	36	21	26	15	1.93
348228--348362	49	2.7	50	79	8	143	34	21	25	17	1.95
348287--348357	25	2.9	24	83	10	99	30	21	29	18	1.97
348342--348411	25	2.8	25	91	4	115	42	18	24	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351931--351979	22	2.2	22	85	0	62	18	32	14	34	1.91
353188--353219	7	4.7	7	92	7	57	25	0	0	75	0.81
353188--353219	13	2.4	14	94	5	57	25	0	0	75	0.81
354096--354154	16	3.6	16	77	11	57	45	3	1	49	1.28
354095--354166	32	2.3	30	80	17	76	43	2	1	52	1.24
354728--354788	23	2.6	23	82	12	70	45	0	0	54	1.00
354728--354780	20	2.4	23	84	12	76	47	0	0	52	1.00
355185--355363	85	2.1	85	91	1	288	36	11	9	41	1.74
363178--363228	18	3.1	17	76	21	54	68	0	19	11	1.20
363720--363754	3	12.0	3	87	6	54	65	0	31	2	1.07
365351--365386	16	2.2	17	90	5	56	11	52	0	36	1.37
371682--371719	14	2.6	15	83	8	51	65	5	5	23	1.34
371978--372020	21	2.0	21	82	8	52	48	4	11	34	1.60
374585--374622	20	1.9	20	84	10	51	39	0	2	57	1.12
386558--386995	243	1.8	243	95	0	804	30	19	23	25	1.98
389410--389457	24	2.0	24	84	8	62	45	0	14	39	1.45
390521--390559	5	7.6	5	88	5	60	5	61	33	0	1.18
390509--390559	16	3.2	16	91	2	77	7	58	31	1	1.37
396059--396121	31	2.1	30	87	3	90	9	19	15	55	1.67
396265--396333	9	7.3	9	80	13	77	53	1	1	43	1.18
396269--396333	20	3.4	19	79	10	78	53	1	1	43	1.19
396287--396343	29	1.9	30	85	3	80	57	1	1	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396261--396343	40	2.1	40	86	4	114	57	1	1	39	1.14
396954--397025	28	2.5	29	77	2	74	48	34	0	16	1.47
397410--397493	38	2.2	39	91	2	134	48	3	0	47	1.19
397451--397840	194	2.0	195	99	0	773	37	15	15	31	1.89
407582--407659	39	2.0	39	97	0	147	21	10	20	47	1.80
413063--413106	19	2.2	19	84	12	52	45	0	2	52	1.13
413063--413101	16	2.5	15	83	8	51	43	0	2	53	1.14
415237--415297	31	2.0	31	100	0	122	19	4	16	59	1.55
416139--416424	145	2.0	142	88	4	423	38	9	24	27	1.86
418571--418595	13	1.9	13	100	0	50	32	4	24	40	1.73
420377--420433	27	2.1	27	87	6	80	31	22	22	22	1.98
420463--420509	24	2.0	24	83	8	60	17	6	27	48	1.71
420578--420643	27	2.5	26	85	9	80	21	22	21	34	1.96
420681--420910	32	7.4	32	70	10	145	20	20	21	38	1.94
421876--421988	43	2.7	42	75	9	113	27	16	24	30	1.97
426209--426658	226	2.0	226	92	0	740	32	12	22	33	1.91
428394--428452	17	3.4	17	72	4	55	40	16	3	38	1.66
430928--431293	183	2.0	187	84	5	481	38	5	12	43	1.65
431814--431876	30	2.1	30	91	5	101	57	11	3	28	1.49
432644--432678	10	3.7	9	88	11	52	65	0	2	31	1.07
444907--444998	37	2.5	37	81	8	116	31	21	1	45	1.59
446224--446281	30	1.9	31	96	3	109	22	34	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446488--446535	25	1.9	25	100	0	96	22	20	20	35	1.96
460908--460964	22	2.6	22	82	0	69	17	19	26	36	1.94
460883--461002	60	2.0	60	88	0	177	20	19	25	35	1.96
460931--461127	76	2.6	76	84	4	238	19	20	26	33	1.97
460931--461129	38	5.2	38	77	0	191	19	20	26	33	1.96
467449--467490	22	1.9	22	90	0	66	14	11	35	38	1.83
467459--467731	38	7.2	38	79	8	279	16	20	30	32	1.95
467459--467730	76	3.6	76	83	5	327	16	20	30	31	1.95
467459--467730	114	2.4	114	86	2	368	16	20	30	31	1.95
476484--476573	41	2.2	41	88	7	130	22	24	2	51	1.60

Tables:   1   2   3   4